Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAFX13_RS16980 Genome accession   NZ_CP155084
Coordinates   1809770..1811314 (-) Length   514 a.a.
NCBI ID   WP_029839056.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804770..1816314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS16960 (AAFX13_16960) - 1804784..1806214 (-) 1431 WP_029839051.1 lipopolysaccharide biosynthesis protein -
  AAFX13_RS16965 (AAFX13_16965) - 1806207..1807379 (-) 1173 WP_029839052.1 glycosyltransferase family 4 protein -
  AAFX13_RS16970 (AAFX13_16970) - 1807390..1808574 (-) 1185 WP_025524677.1 glycosyltransferase -
  AAFX13_RS16975 (AAFX13_16975) - 1808725..1809795 (-) 1071 WP_031816347.1 glycosyltransferase family 4 protein -
  AAFX13_RS16980 (AAFX13_16980) luxO 1809770..1811314 (-) 1545 WP_029839056.1 sigma-54-dependent transcriptional regulator Regulator
  AAFX13_RS16985 (AAFX13_16985) - 1811586..1811966 (-) 381 WP_005454845.1 Hpt domain-containing protein -
  AAFX13_RS16990 (AAFX13_16990) - 1811979..1812665 (-) 687 WP_031816348.1 CpsD/CapB family tyrosine-protein kinase -
  AAFX13_RS16995 (AAFX13_16995) - 1812665..1814731 (-) 2067 WP_228027801.1 SLBB domain-containing protein -
  AAFX13_RS17000 (AAFX13_17000) - 1814764..1815666 (-) 903 WP_069533633.1 OmpA family protein -
  AAFX13_RS17005 (AAFX13_17005) - 1815693..1816013 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57462.32 Da        Isoelectric Point: 5.8567

>NTDB_id=896013 AAFX13_RS16980 WP_029839056.1 1809770..1811314(-) (luxO) [Vibrio parahaemolyticus strain TBV028]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGAATDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNTPAMQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=896013 AAFX13_RS16980 WP_029839056.1 1809770..1811314(-) (luxO) [Vibrio parahaemolyticus strain TBV028]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGTAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTCAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGTTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAGCCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAACATTTTCTCACAACTTATGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAACCTCAACGGACATAATACTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAACTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.299

97.082

0.479