Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AAFX13_RS10725 Genome accession   NZ_CP155084
Coordinates   448902..449375 (-) Length   157 a.a.
NCBI ID   WP_023624904.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 443902..454375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS10700 (AAFX13_10700) - 444166..444972 (-) 807 WP_411062578.1 hypothetical protein -
  AAFX13_RS10705 (AAFX13_10705) - 445350..446006 (+) 657 WP_411062579.1 inovirus Gp2 family protein -
  AAFX13_RS10710 (AAFX13_10710) - 446381..447538 (-) 1158 WP_411062580.1 hypothetical protein -
  AAFX13_RS10715 (AAFX13_10715) - 447535..448359 (-) 825 WP_411062581.1 helix-turn-helix transcriptional regulator -
  AAFX13_RS10720 (AAFX13_10720) - 448474..448905 (-) 432 WP_029864910.1 DUF2787 family protein -
  AAFX13_RS10725 (AAFX13_10725) radC 448902..449375 (-) 474 WP_023624904.1 RadC family protein Machinery gene
  AAFX13_RS10730 (AAFX13_10730) - 449546..449695 (+) 150 WP_005489496.1 AlpA family phage regulatory protein -
  AAFX13_RS10735 (AAFX13_10735) - 449855..450079 (+) 225 WP_029864913.1 hypothetical protein -
  AAFX13_RS10740 (AAFX13_10740) hslU 450504..451835 (-) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  AAFX13_RS10745 (AAFX13_10745) hslV 451859..452410 (-) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  AAFX13_RS10750 (AAFX13_10750) ftsN 452574..453119 (-) 546 WP_005481405.1 cell division protein FtsN -
  AAFX13_RS10755 (AAFX13_10755) cytR 453295..454341 (-) 1047 WP_254894148.1 DNA-binding transcriptional regulator CytR Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17589.05 Da        Isoelectric Point: 7.2350

>NTDB_id=895983 AAFX13_RS10725 WP_023624904.1 448902..449375(-) (radC) [Vibrio parahaemolyticus strain TBV028]
MSTNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPDATKEYVRFKLASAEHEVFALLLLDSQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=895983 AAFX13_RS10725 WP_023624904.1 448902..449375(-) (radC) [Vibrio parahaemolyticus strain TBV028]
ATGTCGACCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCCGCTGAAATCCT
CGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCGGATGCAACCAAAGAGTATGTTCGATTCAAACTAGCCAGCG
CTGAACACGAGGTTTTCGCTCTGCTACTGCTTGATAGCCAACACCGTGTCATCGAATTTAAATCACTCTTTAAAGGCACC
ATTGATTCCGCTAGCGTTTATCCTCGCGAGGTCGTCAAAAGCGTTTTGGAAGTGAATGCAGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCCGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTCATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTCGGAGAAAGCAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.715

87.261

0.408