Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AAFX13_RS08660 Genome accession   NZ_CP155084
Coordinates   20930..22153 (-) Length   407 a.a.
NCBI ID   WP_025787112.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 15930..27153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS08630 (AAFX13_08625) - 16115..16525 (+) 411 WP_005460376.1 flagellar basal body-associated protein FliL -
  AAFX13_RS08635 (AAFX13_08630) glpG 16585..17427 (-) 843 WP_025510242.1 rhomboid family intramembrane serine protease GlpG -
  AAFX13_RS08640 (AAFX13_08635) glpE 17427..17747 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  AAFX13_RS08645 (AAFX13_08640) rpoH 18239..19099 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  AAFX13_RS08650 (AAFX13_08645) ftsX 19275..20243 (-) 969 WP_024699859.1 permease-like cell division protein FtsX -
  AAFX13_RS08655 (AAFX13_08650) ftsE 20233..20907 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  AAFX13_RS08660 (AAFX13_08655) pilA 20930..22153 (-) 1224 WP_025787112.1 signal recognition particle-docking protein FtsY Machinery gene
  AAFX13_RS08665 (AAFX13_08660) rsmD 22377..22976 (+) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAFX13_RS08670 (AAFX13_08665) - 23002..23268 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  AAFX13_RS08675 (AAFX13_08670) - 23322..23906 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  AAFX13_RS08680 (AAFX13_08675) - 24026..24247 (-) 222 WP_015297472.1 YecH family metal-binding protein -
  AAFX13_RS08685 (AAFX13_08680) - 24317..24937 (-) 621 WP_005481960.1 lysoplasmalogenase -
  AAFX13_RS08690 (AAFX13_08685) - 25672..25851 (+) 180 WP_005458791.1 hypothetical protein -
  AAFX13_RS08695 (AAFX13_08690) - 25914..26282 (-) 369 WP_005489749.1 hypothetical protein -
  AAFX13_RS08700 (AAFX13_08695) - 26524..26853 (+) 330 WP_005459127.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44324.91 Da        Isoelectric Point: 4.2729

>NTDB_id=895967 AAFX13_RS08660 WP_025787112.1 20930..22153(-) (pilA) [Vibrio parahaemolyticus strain TBV028]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINN
LTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGD
TFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDS
APHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFETQEFID
ALFSREE

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=895967 AAFX13_RS08660 WP_025787112.1 20930..22153(-) (pilA) [Vibrio parahaemolyticus strain TBV028]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCTCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCG
CCTTAAGCGCAGCCTAAGCCGTACGAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATG
ACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAAC
CTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGAT
TCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTG
TGGGTAAAACCACCACCATCGGTAAACTTGCTAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGAT
ACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGG
CGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGG
CGGGTCGTCTACAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAAATTGATGATTCT
GCACCACATGAAATCATGCTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGT
AGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTGATCAGT
TTGGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGAC
GCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(204-403)

SRP54-type protein, helical bundle domain (SRP54_N)

(123-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.072

92.629

0.455