Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R4706_RS02690 Genome accession   NZ_CP137111
Coordinates   544384..544650 (-) Length   88 a.a.
NCBI ID   WP_044727884.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 17023     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 544773..557905 544384..544650 flank 123
IS/Tn 544773..545222 544384..544650 flank 123


Gene organization within MGE regions


Location: 544384..557905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4706_RS02690 HI0659 544384..544650 (-) 267 WP_044727884.1 helix-turn-helix domain-containing protein Machinery gene
  R4706_RS02695 - 544776..545222 (-) 447 Protein_534 IS30 family transposase -
  R4706_RS02700 - 545477..546358 (-) 882 WP_001267157.1 helix-turn-helix transcriptional regulator -
  R4706_RS02705 - 546596..547105 (+) 510 WP_001066470.1 hypothetical protein -
  R4706_RS02710 - 547377..548060 (+) 684 WP_000743644.1 DUF6973 domain-containing protein -
  R4706_RS02715 - 548081..549085 (+) 1005 WP_044727915.1 endonuclease/exonuclease/phosphatase family protein -
  R4706_RS02720 pheT 549153..551558 (-) 2406 WP_044727914.1 phenylalanine--tRNA ligase subunit beta -
  R4706_RS02725 - 551635..552144 (-) 510 WP_000619950.1 N-acetyltransferase -
  R4706_RS02730 pheS 552144..553190 (-) 1047 WP_044727917.1 phenylalanine--tRNA ligase subunit alpha -
  R4706_RS02735 - 553782..555197 (-) 1416 WP_000151851.1 glycoside hydrolase family 1 protein -
  R4706_RS02740 - 555210..557048 (-) 1839 WP_044727631.1 beta-glucoside-specific PTS transporter subunit IIABC -
  R4706_RS02745 licT 557066..557905 (-) 840 WP_050198740.1 BglG family transcription antiterminator LicT -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9645.28 Da        Isoelectric Point: 5.1633

>NTDB_id=895924 R4706_RS02690 WP_044727884.1 544384..544650(-) (HI0659) [Streptococcus pneumoniae strain 17023]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKILAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=895924 R4706_RS02690 WP_044727884.1 544384..544650(-) (HI0659) [Streptococcus pneumoniae strain 17023]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGATACTAGCAGTC
GTCCGACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523