Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ABC966_RS06115 Genome accession   NZ_CP155062
Coordinates   1284939..1286090 (+) Length   383 a.a.
NCBI ID   WP_000020351.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC130-MRSA-XI     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1279939..1291090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC966_RS06090 (ABC966_06090) - 1280767..1282053 (+) 1287 WP_000664773.1 pitrilysin family protein -
  ABC966_RS06095 (ABC966_06095) - 1282053..1282757 (+) 705 WP_000646224.1 SDR family NAD(P)-dependent oxidoreductase -
  ABC966_RS06100 (ABC966_06100) - 1282862..1283689 (+) 828 WP_000214890.1 YmfK family protein -
  ABC966_RS06105 (ABC966_06105) - 1283708..1284100 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  ABC966_RS06110 (ABC966_06110) pgsA 1284134..1284712 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABC966_RS06115 (ABC966_06115) cinA 1284939..1286090 (+) 1152 WP_000020351.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ABC966_RS06120 (ABC966_06120) recA 1286255..1287298 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  ABC966_RS06125 (ABC966_06125) rny 1287652..1289211 (+) 1560 WP_001050913.1 ribonuclease Y -
  ABC966_RS06130 (ABC966_06130) - 1289508..1289723 (-) 216 WP_000026308.1 hypothetical protein -
  ABC966_RS06135 (ABC966_06135) - 1289897..1290694 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43161.43 Da        Isoelectric Point: 6.1914

>NTDB_id=895829 ABC966_RS06115 WP_000020351.1 1284939..1286090(+) (cinA) [Staphylococcus aureus strain CC130-MRSA-XI]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDALKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=895829 ABC966_RS06115 WP_000020351.1 1284939..1286090(+) (cinA) [Staphylococcus aureus strain CC130-MRSA-XI]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTTTTGCTAGGTCAAATTGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGCTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.436

100

0.436