Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABC966_RS00120 Genome accession   NZ_CP155062
Coordinates   30220..31020 (+) Length   266 a.a.
NCBI ID   WP_025174640.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC130-MRSA-XI     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 25220..36020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC966_RS00105 (ABC966_00105) walK 25891..27717 (+) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -
  ABC966_RS00110 (ABC966_00110) yycH 27710..29044 (+) 1335 WP_046597259.1 two-component system activity regulator YycH -
  ABC966_RS00115 (ABC966_00115) yycI 29045..29833 (+) 789 WP_001104162.1 two-component system regulatory protein YycI -
  ABC966_RS00120 (ABC966_00120) vicX 30220..31020 (+) 801 WP_025174640.1 MBL fold metallo-hydrolase Regulator
  ABC966_RS00125 (ABC966_00125) adsA 31247..33565 (+) 2319 WP_046597258.1 LPXTG-anchored adenosine synthase AdsA -
  ABC966_RS00130 (ABC966_00130) rlmH 33933..34412 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABC966_RS00135 (ABC966_00135) blaZ 34728..35579 (-) 852 WP_000733402.1 mecC-type penicillin-hydrolyzing class A beta-lactamase BlaZ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30283.43 Da        Isoelectric Point: 6.3392

>NTDB_id=895795 ABC966_RS00120 WP_025174640.1 30220..31020(+) (vicX) [Staphylococcus aureus strain CC130-MRSA-XI]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIQDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPTDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=895795 ABC966_RS00120 WP_025174640.1 30220..31020(+) (vicX) [Staphylococcus aureus strain CC130-MRSA-XI]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TTTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTCAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATCCCTACGGATCAGAAATTCATTTTTAATCC
TTATGAAACAAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAATGTGTCACATGATGCAATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTGACAGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACTTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474