Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACE1SG_RS05310 Genome accession   NZ_AP027716
Coordinates   1090438..1090953 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain TBU0218_10-1CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1085438..1095953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1SG_RS05265 (VEE66_10280) csrA 1086025..1086210 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  ACE1SG_RS05295 (VEE66_10290) yqaB 1087668..1088234 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ACE1SG_RS05300 (VEE66_10300) yqaA 1088231..1088659 (+) 429 WP_001287454.1 YqaA family protein -
  ACE1SG_RS05305 (VEE66_10310) gshA 1088732..1090288 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  ACE1SG_RS05310 (VEE66_10320) luxS 1090438..1090953 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ACE1SG_RS05315 (VEE66_10330) emrB 1091017..1092555 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  ACE1SG_RS05320 (VEE66_10340) emrA 1092572..1093744 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ACE1SG_RS05325 (VEE66_10350) emrR 1093871..1094401 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ACE1SG_RS05330 (VEE66_10360) ygaH 1094492..1094827 (-) 336 WP_172410137.1 L-valine transporter subunit YgaH -
  ACE1SG_RS05335 (VEE66_10370) ygaZ 1094817..1095554 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=89574 ACE1SG_RS05310 WP_001130211.1 1090438..1090953(+) (luxS) [Escherichia coli strain TBU0218_10-1CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89574 ACE1SG_RS05310 WP_001130211.1 1090438..1090953(+) (luxS) [Escherichia coli strain TBU0218_10-1CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGATGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment