Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LDN97_RS01925 Genome accession   NZ_AP024940
Coordinates   393448..394887 (+) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain KAM339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388448..399887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN97_RS01895 (KAM339_003630) mlaF 389026..389826 (-) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -
  LDN97_RS01900 (KAM339_003640) - 390033..391028 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  LDN97_RS01905 (KAM339_003650) kdsC 391028..391582 (+) 555 WP_041214035.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LDN97_RS01910 (KAM339_003660) lptC 391579..392139 (+) 561 WP_223956117.1 LPS export ABC transporter periplasmic protein LptC -
  LDN97_RS01915 (KAM339_003670) lptA 392126..392644 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  LDN97_RS01920 (KAM339_003680) lptB 392657..393382 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  LDN97_RS01925 (KAM339_003690) rpoN/rpoN1 393448..394887 (+) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  LDN97_RS01930 (KAM339_003700) hpf 394908..395195 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  LDN97_RS01935 (KAM339_003710) ptsN 395198..395644 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LDN97_RS01940 (KAM339_003720) rapZ 395685..396551 (+) 867 WP_010675869.1 RNase adapter RapZ -
  LDN97_RS01945 (KAM339_003730) npr 396572..396844 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  LDN97_RS01950 (KAM339_003740) - 396860..398764 (-) 1905 WP_223956118.1 BglG family transcription antiterminator -
  LDN97_RS01955 (KAM339_003750) dagF 398868..399608 (-) 741 WP_103259446.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=89573 LDN97_RS01925 WP_039040474.1 393448..394887(+) (rpoN/rpoN1) [Aeromonas caviae strain KAM339]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=89573 LDN97_RS01925 WP_039040474.1 393448..394887(+) (rpoN/rpoN1) [Aeromonas caviae strain KAM339]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGTGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACTCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTACTGGATCTTATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment