Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4715_RS05390 Genome accession   NZ_CP137108
Coordinates   1068779..1069537 (-) Length   252 a.a.
NCBI ID   WP_317829975.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain OXT     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063779..1074537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4715_RS05365 - 1063911..1064162 (+) 252 WP_000644292.1 hypothetical protein -
  R4715_RS05370 - 1064781..1065200 (+) 420 WP_000187319.1 DUF1492 domain-containing protein -
  R4715_RS05375 - 1065651..1065845 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4715_RS05380 dnaN 1065910..1067046 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4715_RS05385 dnaA 1067205..1068566 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4715_RS05390 spo0J 1068779..1069537 (-) 759 WP_317829975.1 ParB/RepB/Spo0J family partition protein Regulator
  R4715_RS05395 htrA 1069595..1070776 (-) 1182 WP_000681597.1 S1C family serine protease Regulator
  R4715_RS05400 rlmH 1070959..1071438 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4715_RS05410 comC/comC1 1071720..1071845 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4715_RS05415 comD/comD1 1071866..1073191 (+) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R4715_RS05420 comE 1073188..1073940 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29086.47 Da        Isoelectric Point: 8.7036

>NTDB_id=895701 R4715_RS05390 WP_317829975.1 1068779..1069537(-) (spo0J) [Streptococcus pneumoniae strain OXT]
MEKFEMISITDIQKNPYQPRKEFDREKLAELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895701 R4715_RS05390 WP_317829975.1 1068779..1069537(-) (spo0J) [Streptococcus pneumoniae strain OXT]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGCTGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504