Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LDO07_RS10625 Genome accession   NZ_AP024937
Coordinates   1940257..1940565 (+) Length   102 a.a.
NCBI ID   WP_024119555.1    Uniprot ID   -
Organism   Thermus thermophilus strain AK1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1935257..1945565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO07_RS10595 (TthAK1_20860) - 1936339..1936803 (+) 465 WP_143586880.1 hypothetical protein -
  LDO07_RS10600 (TthAK1_20870) pfkA 1936780..1937748 (-) 969 WP_143586882.1 6-phosphofructokinase -
  LDO07_RS10605 (TthAK1_20880) rsmI 1937745..1938539 (-) 795 WP_143586885.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LDO07_RS10610 (TthAK1_20890) - 1938541..1939035 (-) 495 WP_014630403.1 hypothetical protein -
  LDO07_RS10615 (TthAK1_20900) - 1939098..1939625 (-) 528 WP_011173971.1 inorganic diphosphatase -
  LDO07_RS10620 (TthAK1_20910) - 1939658..1940284 (+) 627 WP_011173972.1 YcxB family protein -
  LDO07_RS10625 (TthAK1_20920) comEA 1940257..1940565 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  LDO07_RS10630 (TthAK1_20930) comA/comEC 1940562..1942595 (+) 2034 WP_223965809.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDO07_RS10635 (TthAK1_20940) - 1942583..1943392 (-) 810 WP_143586891.1 ParB/RepB/Spo0J family partition protein -
  LDO07_RS10640 (TthAK1_20950) soj 1943376..1944125 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  LDO07_RS10645 (TthAK1_20960) rsmG 1944119..1944868 (-) 750 WP_143586893.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10947.23 Da        Isoelectric Point: 10.3435

>NTDB_id=89570 LDO07_RS10625 WP_024119555.1 1940257..1940565(+) (comEA) [Thermus thermophilus strain AK1]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=89570 LDO07_RS10625 WP_024119555.1 1940257..1940565(+) (comEA) [Thermus thermophilus strain AK1]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTAGCCCGGCGCATCGTGGAAGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

100

100

1
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.815

100

0.422

Multiple sequence alignment