Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R4715_RS05085 Genome accession   NZ_CP137108
Coordinates   1023518..1024879 (-) Length   453 a.a.
NCBI ID   WP_073076903.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain OXT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018518..1029879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4715_RS05060 - 1019545..1020452 (+) 908 Protein_1008 Rpn family recombination-promoting nuclease/putative transposase -
  R4715_RS05065 - 1020580..1020861 (+) 282 Protein_1009 ISL3 family transposase -
  R4715_RS05070 - 1020995..1021963 (-) 969 WP_000010163.1 ribose-phosphate diphosphokinase -
  R4715_RS05075 - 1022108..1022923 (-) 816 WP_000749768.1 PrsW family intramembrane metalloprotease -
  R4715_RS05080 - 1022948..1023445 (-) 498 WP_001809263.1 carbonic anhydrase -
  R4715_RS05085 radA 1023518..1024879 (-) 1362 WP_073076903.1 DNA repair protein RadA Machinery gene
  R4715_RS05090 - 1024893..1025408 (-) 516 WP_000691236.1 histidine phosphatase family protein -
  R4715_RS05095 - 1025410..1025853 (-) 444 WP_000701992.1 dUTP diphosphatase -
  R4715_RS05105 tadA 1026040..1026507 (-) 468 WP_000291879.1 tRNA adenosine(34) deaminase TadA -
  R4715_RS05110 - 1026708..1027994 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  R4715_RS05115 comW 1028225..1028461 (-) 237 WP_000939544.1 sigma(X)-activator ComW Regulator
  R4715_RS05120 - 1028727..1029524 (+) 798 Protein_1019 transposase -
  R4715_RS05125 - 1029559..1029768 (-) 210 Protein_1020 transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49462.93 Da        Isoelectric Point: 6.1868

>NTDB_id=895698 R4715_RS05085 WP_073076903.1 1023518..1024879(-) (radA) [Streptococcus pneumoniae strain OXT]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINETAKLGFTKIYVPQNSLTGITLPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=895698 R4715_RS05085 WP_073076903.1 1023518..1024879(-) (radA) [Streptococcus pneumoniae strain OXT]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTACGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAACTGCTAAACTGGGCTTTACTAAGATTTATGTACCTCAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.558

100

0.996
  radA Streptococcus pneumoniae D39

99.558

100

0.996
  radA Streptococcus pneumoniae R6

99.558

100

0.996
  radA Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radA Streptococcus mitis SK321

99.117

100

0.991
  radA Streptococcus mitis NCTC 12261

99.117

100

0.991
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629