Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4711_RS02990 Genome accession   NZ_CP137107
Coordinates   591804..592535 (-) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain 15H4024     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 586804..597535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4711_RS02960 blpC 587350..587505 (+) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  R4711_RS02965 - 587550..588890 (-) 1341 WP_001099895.1 sensor histidine kinase -
  R4711_RS02970 comE/blpR 588904..589641 (-) 738 WP_001219146.1 response regulator transcription factor Regulator
  R4711_RS02975 - 589646..589984 (-) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  R4711_RS02980 - 590261..590590 (+) 330 WP_000132572.1 hypothetical protein -
  R4711_RS02985 - 590758..591807 (-) 1050 WP_000653771.1 ABC transporter permease -
  R4711_RS02990 pptA 591804..592535 (-) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  R4711_RS02995 - 592603..593013 (+) 411 WP_001278301.1 HIT family protein -
  R4711_RS03000 - 593023..593310 (+) 288 WP_000777760.1 hypothetical protein -
  R4711_RS03005 - 593472..593666 (+) 195 WP_001808905.1 hypothetical protein -
  R4711_RS03010 dnaJ 593988..595124 (-) 1137 WP_001066288.1 molecular chaperone DnaJ -
  R4711_RS03015 - 595294..595927 (-) 634 Protein_600 DJ-1/PfpI family protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=895617 R4711_RS02990 WP_000889919.1 591804..592535(-) (pptA) [Streptococcus pneumoniae strain 15H4024]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895617 R4711_RS02990 WP_000889919.1 591804..592535(-) (pptA) [Streptococcus pneumoniae strain 15H4024]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712