Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AAHT64_RS20245 Genome accession   NZ_CP155054
Coordinates   3920805..3921035 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3915805..3926035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS20235 (AAHT64_20235) spoVT 3916530..3917066 (-) 537 WP_003218365.1 stage V sporulation protein T -
  AAHT64_RS20240 (AAHT64_20240) mfd 3917202..3920735 (-) 3534 WP_003226723.1 transcription-repair coupling factor -
  AAHT64_RS20245 (AAHT64_20245) subA/fin 3920805..3921035 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  AAHT64_RS20250 (AAHT64_20250) pth 3921095..3921661 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  AAHT64_RS20255 (AAHT64_20255) ctc 3921768..3922382 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AAHT64_RS20260 (AAHT64_20260) prs 3922467..3923420 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  AAHT64_RS20265 (AAHT64_20265) glmU 3923443..3924813 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AAHT64_RS20270 (AAHT64_20270) spoVG 3925006..3925299 (-) 294 WP_003218346.1 septation regulator SpoVG -
  AAHT64_RS20275 (AAHT64_20275) ridA 3925493..3925870 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=895604 AAHT64_RS20245 WP_003243417.1 3920805..3921035(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain R38]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=895604 AAHT64_RS20245 WP_003243417.1 3920805..3921035(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain R38]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1