Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4711_RS00895 Genome accession   NZ_CP137107
Coordinates   185489..186442 (-) Length   317 a.a.
NCBI ID   WP_050263864.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15H4024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 180489..191442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4711_RS00870 - 180978..181073 (-) 96 Protein_173 IS630 family transposase -
  R4711_RS00875 - 181485..181826 (+) 342 Protein_174 transposase -
  R4711_RS00880 prsA 181945..182886 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  R4711_RS00885 - 182953..183666 (-) 714 WP_078142865.1 O-methyltransferase -
  R4711_RS00890 pepF 183668..185470 (-) 1803 WP_050263863.1 oligoendopeptidase F Regulator
  R4711_RS00895 coiA 185489..186442 (-) 954 WP_050263864.1 competence protein CoiA Machinery gene
  R4711_RS00900 tehB 186515..187375 (-) 861 WP_000413763.1 SAM-dependent methyltransferase TehB -
  R4711_RS00905 smpB 187391..187858 (-) 468 WP_001051747.1 SsrA-binding protein SmpB -
  R4711_RS00910 rnr 187821..190175 (-) 2355 WP_050263865.1 ribonuclease R -
  R4711_RS00915 secG 190277..190510 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4711_RS00920 rpmG 190550..190699 (-) 150 WP_001809104.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38277.88 Da        Isoelectric Point: 8.9865

>NTDB_id=895604 R4711_RS00895 WP_050263864.1 185489..186442(-) (coiA) [Streptococcus pneumoniae strain 15H4024]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNFFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895604 R4711_RS00895 WP_050263864.1 185489..186442(-) (coiA) [Streptococcus pneumoniae strain 15H4024]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATTTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.369

100

0.994
  coiA Streptococcus pneumoniae Rx1

98.738

100

0.987
  coiA Streptococcus pneumoniae D39

98.738

100

0.987
  coiA Streptococcus pneumoniae R6

98.738

100

0.987
  coiA Streptococcus mitis NCTC 12261

88.959

100

0.89
  coiA Lactococcus lactis subsp. cremoris KW2

42.284

100

0.432