Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   R4702_RS10615 Genome accession   NZ_CP137106
Coordinates   2068315..2069124 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 16P4028     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2063315..2074124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS10595 - 2064814..2064939 (-) 126 WP_001818232.1 hypothetical protein -
  R4702_RS10600 mutY 2065036..2066211 (+) 1176 WP_000886152.1 A/G-specific adenine glycosylase -
  R4702_RS10605 micA 2066267..2066971 (+) 705 WP_000722076.1 response regulator YycF Regulator
  R4702_RS10610 micB 2066964..2068313 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  R4702_RS10615 vicX 2068315..2069124 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  R4702_RS10620 relB 2069215..2069457 (+) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  R4702_RS10625 - 2069459..2069713 (+) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R4702_RS10630 - 2069788..2071659 (+) 1872 WP_000150986.1 Eco57I restriction-modification methylase domain-containing protein -
  R4702_RS11035 - 2071824..2072672 (+) 849 Protein_2061 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=895602 R4702_RS10615 WP_001289493.1 2068315..2069124(+) (vicX) [Streptococcus pneumoniae strain 16P4028]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=895602 R4702_RS10615 WP_001289493.1 2068315..2069124(+) (vicX) [Streptococcus pneumoniae strain 16P4028]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773