Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R4702_RS06505 Genome accession   NZ_CP137106
Coordinates   1282065..1283018 (+) Length   317 a.a.
NCBI ID   WP_000345100.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277065..1288018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS06460 - 1277122..1277487 (+) 366 WP_000286415.1 DUF1033 family protein -
  R4702_RS06465 comGA/cglA/cilD 1277563..1278504 (+) 942 WP_024478452.1 competence type IV pilus ATPase ComGA Machinery gene
  R4702_RS06470 comGB/cglB 1278452..1279468 (+) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  R4702_RS06475 comGC/cglC 1279470..1279796 (+) 327 WP_000738632.1 comG operon protein ComGC Machinery gene
  R4702_RS06480 comGD/cglD 1279789..1280193 (+) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  R4702_RS06485 comGE/cglE 1280156..1280458 (+) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R4702_RS06490 comGF/cglF 1280421..1280882 (+) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  R4702_RS06495 comGG/cglG 1280860..1281273 (+) 414 WP_000265631.1 competence type IV pilus minor pilin ComGG Machinery gene
  R4702_RS06500 - 1281410..1282004 (+) 595 Protein_1274 class I SAM-dependent methyltransferase -
  R4702_RS06505 comYH 1282065..1283018 (+) 954 WP_000345100.1 class I SAM-dependent methyltransferase Machinery gene
  R4702_RS06510 - 1283069..1284259 (+) 1191 WP_000167766.1 acetate kinase -
  R4702_RS06515 - 1284260..1284391 (+) 132 WP_000768904.1 hypothetical protein -
  R4702_RS06520 rnpA 1284408..1284779 (+) 372 WP_317809495.1 ribonuclease P protein component -
  R4702_RS06525 - 1284754..1285578 (+) 825 WP_000727904.1 membrane protein insertase YidC -
  R4702_RS06530 jag 1285597..1286583 (+) 987 WP_317809497.1 RNA-binding cell elongation regulator Jag/EloR -
  R4702_RS06535 - 1286634..1287257 (+) 624 WP_000932654.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35687.93 Da        Isoelectric Point: 4.2995

>NTDB_id=895570 R4702_RS06505 WP_000345100.1 1282065..1283018(+) (comYH) [Streptococcus pneumoniae strain 16P4028]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895570 R4702_RS06505 WP_000345100.1 1282065..1283018(+) (comYH) [Streptococcus pneumoniae strain 16P4028]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539