Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAHT64_RS13665 Genome accession   NZ_CP155054
Coordinates   2656572..2657708 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2651572..2662708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS13625 (AAHT64_13625) xre 2651914..2652255 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  AAHT64_RS13630 (AAHT64_13630) xkdA 2652418..2653014 (+) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  AAHT64_RS13635 (AAHT64_13635) xpdC 2653050..2653886 (-) 837 WP_003245071.1 manganese catalase family protein -
  AAHT64_RS13640 (AAHT64_13640) pghB 2653963..2654565 (-) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  AAHT64_RS13645 (AAHT64_13645) yjqA 2654670..2655047 (+) 378 WP_014476529.1 PH domain-containing protein -
  AAHT64_RS13650 (AAHT64_13650) xlyB 2655087..2656040 (-) 954 WP_032721375.1 N-acetylmuramoyl-L-alanine amidase -
  AAHT64_RS13655 (AAHT64_13655) yjpA 2656160..2656417 (+) 258 WP_003232731.1 YciI family protein -
  AAHT64_RS13660 (AAHT64_13660) phrA 2656448..2656582 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AAHT64_RS13665 (AAHT64_13665) rapC 2656572..2657708 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  AAHT64_RS13670 (AAHT64_13670) yjoB 2657853..2659124 (-) 1272 WP_003245490.1 ATPase YjoB -
  AAHT64_RS13675 (AAHT64_13675) yjoA 2659273..2659737 (+) 465 WP_032730469.1 DinB family protein -
  AAHT64_RS13680 (AAHT64_13680) yjnA 2659962..2660726 (+) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  AAHT64_RS13685 (AAHT64_13685) uxaA 2660765..2662258 (-) 1494 WP_032730467.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=895552 AAHT64_RS13665 WP_015252291.1 2656572..2657708(-) (rapC) [Bacillus subtilis subsp. subtilis strain R38]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=895552 AAHT64_RS13665 WP_015252291.1 2656572..2657708(-) (rapC) [Bacillus subtilis subsp. subtilis strain R38]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418