Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AAHT64_RS11265 Genome accession   NZ_CP155054
Coordinates   2198786..2199217 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2193786..2204217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS11255 (AAHT64_11255) hexA 2195270..2197846 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  AAHT64_RS11260 (AAHT64_11260) cotE 2197979..2198524 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  AAHT64_RS11265 (AAHT64_11265) ymcA 2198786..2199217 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AAHT64_RS11270 (AAHT64_11270) miaB 2199219..2200748 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AAHT64_RS11275 (AAHT64_11275) kbl 2200896..2202074 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  AAHT64_RS11280 (AAHT64_11280) tdh 2202087..2203130 (-) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  AAHT64_RS11285 (AAHT64_11285) spoVS 2203396..2203656 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=895530 AAHT64_RS11265 WP_003231834.1 2198786..2199217(-) (ymcA) [Bacillus subtilis subsp. subtilis strain R38]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=895530 AAHT64_RS11265 WP_003231834.1 2198786..2199217(-) (ymcA) [Bacillus subtilis subsp. subtilis strain R38]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1