Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R4699_RS00315 Genome accession   NZ_CP137105
Coordinates   58669..59652 (+) Length   327 a.a.
NCBI ID   WP_224757774.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 53669..64652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS00290 - 53746..54156 (+) 411 WP_044793582.1 hypothetical protein -
  R4699_RS00295 ply 54167..55582 (+) 1416 WP_001284353.1 cholesterol-dependent cytolysin pneumolysin -
  R4699_RS00300 - 56465..57181 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4699_RS00305 - 57305..57776 (+) 472 Protein_60 MarR family winged helix-turn-helix transcriptional regulator -
  R4699_RS00310 rcrP 57793..58614 (+) 822 WP_000601683.1 ABC transporter permease Regulator
  R4699_RS00315 rcrQ 58669..59652 (+) 984 WP_224757774.1 ABC transporter ATP-binding protein/permease Regulator
  R4699_RS00320 - 59718..60080 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R4699_RS00325 - 60077..60580 (+) 504 WP_044789202.1 phosphatase PAP2 family protein -
  R4699_RS00330 - 60694..61140 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R4699_RS00335 - 61146..61820 (+) 675 WP_050105003.1 LiaF transmembrane domain-containing protein -
  R4699_RS00340 - 62085..62282 (+) 198 Protein_67 N-acetylmuramoyl-L-alanine amidase family protein -
  R4699_RS00345 - 62307..62438 (-) 132 WP_001811306.1 hypothetical protein -
  R4699_RS00350 - 62532..62831 (+) 300 WP_001818001.1 DUF4651 domain-containing protein -
  R4699_RS00355 - 62828..63145 (+) 318 WP_000615776.1 thioredoxin family protein -
  R4699_RS00360 ytpR 63161..63787 (+) 627 WP_000578285.1 YtpR family tRNA-binding protein -
  R4699_RS00365 - 63820..64581 (+) 762 WP_001107768.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36147.85 Da        Isoelectric Point: 4.4301

>NTDB_id=895455 R4699_RS00315 WP_224757774.1 58669..59652(+) (rcrQ) [Streptococcus pneumoniae strain 16H2092]
MVSAKRINQVLDLHSSIQNPAQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTVAFIGSIGSGKSTLVNL
IPRFYDVSAGEILVDGVNVQDYDFSATAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRIDGVDTKAMTRSEVHDA
FSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVGQKQLLTIARAILKDAS
LLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEELMAQGGFYADLYNSQF
TEDEAEE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=895455 R4699_RS00315 WP_224757774.1 58669..59652(+) (rcrQ) [Streptococcus pneumoniae strain 16H2092]
ATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCATTCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGACTGA
TGAAAACTTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATG
TTAGCTTTAAAGCAGAAACTGGTCAAACAGTGGCCTTTATTGGGTCAATAGGTTCTGGTAAATCAACTCTGGTCAATCTG
ATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGAC
AGCTCATGCTGGTCAAAGGGTTGCCATTGTTGGGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAAT
TCTATGAGATTGATAAGGGAAGTATTCGCATTGATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCC
TTTTCAATGGTCTTGCAGGATACCTGGCTCTTTGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAG
TGATGAACGAATGATGGAAGCTAGTAAGGCTGTGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCA
TCTTGGATGACACCGTGACCTTGTCTGTAGGACAAAAACAACTATTGACTATTGCTCGTGCCATTCTTAAGGATGCATCG
CTTTTGATTTTGGATGAGGCGACTTCTTCTGTTGACACACGGACAGAGGAATTGATCCAAAAAGCTATGGACCGTTTGAT
GGAAGGACGCACATCCTTTGTCATTGCCCACCGCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATG
GAAATATCATCGAGCAAGGCAACTATGAGGAACTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTT
ACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(104-249)

ABC transporter (ABC_tran)

(52-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

79.911

68.502

0.547