Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | LDO80_RS10770 | Genome accession | NZ_AP024933 |
| Coordinates | 1974312..1974620 (+) | Length | 102 a.a. |
| NCBI ID | WP_024119555.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain AA3-7 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1969312..1979620
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO80_RS10740 (TthAA37_21290) | - | 1970394..1970858 (+) | 465 | WP_224065382.1 | hypothetical protein | - |
| LDO80_RS10745 (TthAA37_21300) | pfkA | 1970835..1971803 (-) | 969 | WP_143586882.1 | 6-phosphofructokinase | - |
| LDO80_RS10750 (TthAA37_21310) | rsmI | 1971800..1972594 (-) | 795 | WP_143586885.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| LDO80_RS10755 (TthAA37_21320) | - | 1972596..1973090 (-) | 495 | WP_014630403.1 | hypothetical protein | - |
| LDO80_RS10760 (TthAA37_21330) | - | 1973153..1973680 (-) | 528 | WP_011173971.1 | inorganic diphosphatase | - |
| LDO80_RS10765 (TthAA37_21340) | - | 1973713..1974339 (+) | 627 | WP_011173972.1 | YcxB family protein | - |
| LDO80_RS10770 (TthAA37_21350) | comEA | 1974312..1974620 (+) | 309 | WP_024119555.1 | ComEA family DNA-binding protein | Machinery gene |
| LDO80_RS10775 (TthAA37_21360) | comA/comEC | 1974617..1976650 (+) | 2034 | WP_223965809.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| LDO80_RS10780 (TthAA37_21370) | - | 1976638..1977447 (-) | 810 | WP_143586891.1 | ParB/RepB/Spo0J family partition protein | - |
| LDO80_RS10785 (TthAA37_21380) | soj | 1977431..1978180 (-) | 750 | WP_011173976.1 | chromosome-partitioning ATPase Soj | - |
| LDO80_RS10790 (TthAA37_21390) | rsmG | 1978174..1978923 (-) | 750 | WP_143586893.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 10947.23 Da Isoelectric Point: 10.3435
>NTDB_id=89544 LDO80_RS10770 WP_024119555.1 1974312..1974620(+) (comEA) [Thermus thermophilus strain AA3-7]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
Nucleotide
Download Length: 309 bp
>NTDB_id=89544 LDO80_RS10770 WP_024119555.1 1974312..1974620(+) (comEA) [Thermus thermophilus strain AA3-7]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTAGCCCGGCGCATCGTGGAAGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTAGCCCGGCGCATCGTGGAAGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Thermus thermophilus HB27 |
100 |
100 |
1 |
| comEA | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.815 |
100 |
0.422 |