Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   M9Y83_RS10460 Genome accession   NZ_CP155048
Coordinates   2180465..2180794 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain CCBH26428     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2175465..2185794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9Y83_RS10445 (M9Y83_0010445) - 2176265..2177221 (+) 957 WP_128661506.1 SDR family oxidoreductase -
  M9Y83_RS10450 (M9Y83_0010450) - 2177223..2178242 (+) 1020 WP_003158833.1 glycosyltransferase family 4 protein -
  M9Y83_RS10455 (M9Y83_0010455) - 2178277..2180274 (+) 1998 WP_128661507.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  M9Y83_RS10460 (M9Y83_0010460) comEA/comE1 2180465..2180794 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  M9Y83_RS10470 (M9Y83_0010470) - 2181011..2182207 (-) 1197 WP_128661508.1 amino acid aminotransferase -
  M9Y83_RS10475 (M9Y83_0010475) uvrB 2182395..2184407 (+) 2013 WP_250180486.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=895378 M9Y83_RS10460 WP_003138486.1 2180465..2180794(+) (comEA/comE1) [Pseudomonas aeruginosa strain CCBH26428]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=895378 M9Y83_RS10460 WP_003138486.1 2180465..2180794(+) (comEA/comE1) [Pseudomonas aeruginosa strain CCBH26428]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385