Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4713_RS08305 Genome accession   NZ_CP137103
Coordinates   1579598..1580329 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21334     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574598..1585329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4713_RS08275 dnaK 1574615..1576438 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  R4713_RS08280 - 1576451..1576804 (+) 354 WP_000115730.1 hypothetical protein -
  R4713_RS08285 dnaJ 1577009..1578145 (+) 1137 WP_001066299.1 molecular chaperone DnaJ -
  R4713_RS08290 - 1578467..1578661 (-) 195 WP_001808905.1 hypothetical protein -
  R4713_RS08295 - 1578823..1579110 (-) 288 WP_000777760.1 hypothetical protein -
  R4713_RS08300 - 1579120..1579530 (-) 411 WP_001278301.1 HIT family protein -
  R4713_RS08305 pptA 1579598..1580329 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R4713_RS08310 - 1580326..1581375 (+) 1050 WP_000653752.1 ABC transporter permease -
  R4713_RS08315 - 1581543..1581872 (-) 330 WP_000132575.1 hypothetical protein -
  R4713_RS08320 - 1582148..1582486 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  R4713_RS08325 comE/blpR 1582491..1583228 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R4713_RS08330 - 1583241..1584581 (+) 1341 WP_000275284.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=895365 R4713_RS08305 WP_000889923.1 1579598..1580329(+) (pptA) [Streptococcus pneumoniae strain 21334]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895365 R4713_RS08305 WP_000889923.1 1579598..1580329(+) (pptA) [Streptococcus pneumoniae strain 21334]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708