Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4713_RS05555 Genome accession   NZ_CP137103
Coordinates   1054024..1054782 (+) Length   252 a.a.
NCBI ID   WP_000410376.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21334     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1049024..1059782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4713_RS05525 comE 1049621..1050373 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R4713_RS05530 comD/comD1 1050370..1051695 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R4713_RS05535 comC/comC1 1051716..1051841 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4713_RS05545 rlmH 1052123..1052602 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4713_RS05550 htrA 1052785..1053966 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  R4713_RS05555 spo0J 1054024..1054782 (+) 759 WP_000410376.1 ParB/RepB/Spo0J family partition protein Regulator
  R4713_RS05560 dnaA 1054995..1056356 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4713_RS05565 dnaN 1056515..1057651 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4713_RS05570 - 1057716..1057910 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4713_RS05575 - 1058361..1058780 (-) 420 WP_000187319.1 DUF1492 domain-containing protein -
  R4713_RS05580 - 1059399..1059650 (-) 252 WP_000644292.1 hypothetical protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29130.48 Da        Isoelectric Point: 8.0022

>NTDB_id=895354 R4713_RS05555 WP_000410376.1 1054024..1054782(+) (spo0J) [Streptococcus pneumoniae strain 21334]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895354 R4713_RS05555 WP_000410376.1 1054024..1054782(+) (spo0J) [Streptococcus pneumoniae strain 21334]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504