Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVB50_RS23125 Genome accession   NZ_CP154923
Coordinates   4358808..4359935 (-) Length   375 a.a.
NCBI ID   WP_019712724.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4353808..4364935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS23085 (AAVB50_23080) - 4354246..4354773 (-) 528 WP_029318121.1 hypothetical protein -
  AAVB50_RS23090 (AAVB50_23085) - 4355034..4355201 (-) 168 Protein_4468 hypothetical protein -
  AAVB50_RS23095 (AAVB50_23090) - 4355667..4356191 (+) 525 WP_345805676.1 tyrosine-type recombinase/integrase -
  AAVB50_RS23100 (AAVB50_23095) - 4356098..4356382 (+) 285 WP_345805677.1 tyrosine-type recombinase/integrase -
  AAVB50_RS23105 (AAVB50_23100) - 4357034..4357696 (+) 663 WP_326256402.1 hypothetical protein -
  AAVB50_RS23110 (AAVB50_23105) - 4357773..4357985 (-) 213 WP_019712720.1 transcriptional regulator -
  AAVB50_RS23115 (AAVB50_23110) - 4357978..4358205 (-) 228 WP_019712721.1 hypothetical protein -
  AAVB50_RS23120 (AAVB50_23115) - 4358314..4358646 (+) 333 WP_019712722.1 YolD-like family protein -
  AAVB50_RS23125 (AAVB50_23120) rapC 4358808..4359935 (-) 1128 WP_019712724.1 Rap family tetratricopeptide repeat protein Regulator
  AAVB50_RS23130 (AAVB50_23125) - 4360147..4361910 (+) 1764 WP_019712725.1 T7SS effector LXG polymorphic toxin -
  AAVB50_RS23135 (AAVB50_23130) - 4361931..4362395 (+) 465 WP_101514141.1 SMI1/KNR4 family protein -
  AAVB50_RS23140 (AAVB50_23135) - 4362446..4363420 (-) 975 WP_326256400.1 N-acetylmuramoyl-L-alanine amidase -
  AAVB50_RS23145 (AAVB50_23140) - 4363476..4363739 (-) 264 WP_101514139.1 phage holin -
  AAVB50_RS23150 (AAVB50_23145) - 4363755..4364033 (-) 279 WP_101514138.1 hemolysin XhlA family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44236.46 Da        Isoelectric Point: 5.8520

>NTDB_id=895349 AAVB50_RS23125 WP_019712724.1 4358808..4359935(-) (rapC) [Bacillus subtilis strain FUA2233]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKSEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIDE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYIDFKRYEKSQPHLERALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
FMKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQHGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=895349 AAVB50_RS23125 WP_019712724.1 4358808..4359935(-) (rapC) [Bacillus subtilis strain FUA2233]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGTCAGAGGTGGAGCAAGAGATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTAGAACCCGTAACAACACGTATAAGACCAACTATTGACGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGTATATCTGGTCTCTTGTCGTATTATTCTCTGTTCTTTAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCGGAAAAGCAGCTTATACATGTCCCCGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTAGATATCTATAATCAATATGAACTTTATAAGGTGCGGAAAGTTCAATGTATGTTTGTTATTTCAGG
AAATTATATTGATTTTAAACGTTATGAAAAAAGTCAGCCGCATCTTGAAAGAGCATTAGAGTTATCTAGGGAATTGAATA
ACAAGAGGTTGATTAGTTCTGCGCTATATAATTTAGGCACAAATTTTGCTGACAGTGGTGATTACGAGCAAGCGGAAGTA
TTCATGAAGCAAGCTGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTCAAACAAGGAAAAATGAATGAAGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATACTTAAAAGCTCTTTATGTCGATGCAGTAGATCAACATGGTGTTAATCAAACCATA
GAGTACTTAGAAAAAAATAAGAACTACTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(193-251)

Tetratricopeptide repeat (TPR_8)

(259-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

43.883

100

0.44
  rapF Bacillus subtilis subsp. subtilis str. 168

39.153

100

0.395