Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AAVB50_RS21590 Genome accession   NZ_CP154923
Coordinates   4042639..4043073 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain FUA2233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4037639..4048073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS21575 (AAVB50_21570) epsK 4038268..4039119 (-) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -
  AAVB50_RS21580 (AAVB50_21575) epsJ 4039100..4040188 (-) 1089 WP_345805631.1 lipoprotein YdaJ -
  AAVB50_RS21585 (AAVB50_21580) topB 4040391..4042574 (-) 2184 WP_029317313.1 DNA topoisomerase III -
  AAVB50_RS21590 (AAVB50_21585) lrpC 4042639..4043073 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AAVB50_RS21595 (AAVB50_21590) ydzA 4043258..4043548 (+) 291 WP_224912742.1 DUF3817 domain-containing protein -
  AAVB50_RS21600 (AAVB50_21595) amj 4043593..4044402 (-) 810 WP_003234394.1 lipid II flippase Amj -
  AAVB50_RS21605 (AAVB50_21600) ydaG 4044908..4045330 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  AAVB50_RS21610 (AAVB50_21605) ydaF 4045408..4045959 (-) 552 WP_061891248.1 GNAT family protein -
  AAVB50_RS21615 (AAVB50_21610) lyxE 4046045..4046548 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AAVB50_RS21620 (AAVB50_21615) ydaD 4046564..4047424 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=895334 AAVB50_RS21590 WP_003246585.1 4042639..4043073(-) (lrpC) [Bacillus subtilis strain FUA2233]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=895334 AAVB50_RS21590 WP_003246585.1 4042639..4043073(-) (lrpC) [Bacillus subtilis strain FUA2233]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
GAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1