Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVB50_RS16905 Genome accession   NZ_CP154923
Coordinates   3165705..3166841 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3160705..3171841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS16865 (AAVB50_16860) xre 3161040..3161381 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  AAVB50_RS16870 (AAVB50_16865) xkdA 3161544..3162140 (+) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  AAVB50_RS16875 (AAVB50_16870) xpdC 3162184..3163020 (-) 837 WP_003245071.1 manganese catalase family protein -
  AAVB50_RS16880 (AAVB50_16875) pghB 3163096..3163698 (-) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  AAVB50_RS16885 (AAVB50_16880) yjqA 3163803..3164180 (+) 378 WP_345806514.1 PH domain-containing protein -
  AAVB50_RS16890 (AAVB50_16885) xlyB 3164220..3165173 (-) 954 WP_134982734.1 N-acetylmuramoyl-L-alanine amidase -
  AAVB50_RS16895 (AAVB50_16890) yjpA 3165294..3165551 (+) 258 WP_024572656.1 YciI family protein -
  AAVB50_RS16900 (AAVB50_16895) phrA 3165581..3165715 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AAVB50_RS16905 (AAVB50_16900) rapC 3165705..3166841 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  AAVB50_RS16910 (AAVB50_16905) yjoB 3166987..3168258 (-) 1272 WP_345806426.1 ATPase YjoB -
  AAVB50_RS16915 (AAVB50_16910) yjoA 3168407..3168871 (+) 465 WP_014479541.1 DinB family protein -
  AAVB50_RS16920 (AAVB50_16915) yjnA 3169097..3169861 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  AAVB50_RS16925 (AAVB50_16920) uxaA 3169902..3171395 (-) 1494 WP_345806427.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=895305 AAVB50_RS16905 WP_015252291.1 3165705..3166841(-) (rapC) [Bacillus subtilis strain FUA2233]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=895305 AAVB50_RS16905 WP_015252291.1 3165705..3166841(-) (rapC) [Bacillus subtilis strain FUA2233]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418