Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AAVB50_RS15510 Genome accession   NZ_CP154923
Coordinates   2912360..2913385 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain FUA2233     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2907360..2918385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS15475 (AAVB50_15470) - 2907845..2908741 (-) 897 WP_003232206.1 2-dehydropantoate 2-reductase -
  AAVB50_RS15480 (AAVB50_15475) ylbP 2908901..2909383 (+) 483 WP_014476736.1 N-acetyltransferase -
  AAVB50_RS15485 (AAVB50_15480) gerR 2909440..2910021 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  AAVB50_RS15490 (AAVB50_15485) rpmF 2910167..2910346 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  AAVB50_RS15495 (AAVB50_15490) ylbN 2910368..2910886 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  AAVB50_RS15500 (AAVB50_15495) - 2910914..2911099 (+) 186 WP_003232215.1 hypothetical protein -
  AAVB50_RS15505 (AAVB50_15500) ylbM 2911096..2912343 (+) 1248 WP_174223259.1 nucleotidyltransferase -
  AAVB50_RS15510 (AAVB50_15505) sepM 2912360..2913385 (-) 1026 WP_003245451.1 protease DdcP Regulator
  AAVB50_RS15515 (AAVB50_15510) ylbK 2913387..2914169 (-) 783 WP_345806375.1 patatin family protein -
  AAVB50_RS15520 (AAVB50_15515) spoVV 2914350..2915576 (+) 1227 WP_345806376.1 dipicolinic acid transporter SpoVV -
  AAVB50_RS15525 (AAVB50_15520) coaD 2915587..2916072 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AAVB50_RS15530 (AAVB50_15525) rsmD 2916077..2916631 (-) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAVB50_RS15535 (AAVB50_15530) ylbG 2916954..2917226 (-) 273 WP_015715839.1 YlbG family protein -
  AAVB50_RS15540 (AAVB50_15535) ylbF 2917281..2917730 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AAVB50_RS15545 (AAVB50_15540) ylbE 2917846..2918085 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=895295 AAVB50_RS15510 WP_003245451.1 2912360..2913385(-) (sepM) [Bacillus subtilis strain FUA2233]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=895295 AAVB50_RS15510 WP_003245451.1 2912360..2913385(-) (sepM) [Bacillus subtilis strain FUA2233]
TTGCTACGAAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402