Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4709_RS07475 Genome accession   NZ_CP137102
Coordinates   1432011..1432721 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427011..1437721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS07455 amiF 1427919..1428845 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R4709_RS07460 - 1429464..1430273 (+) 810 Protein_1424 ABC transporter substrate-binding protein -
  R4709_RS07465 - 1430285..1431162 (+) 878 Protein_1425 ABC transporter permease -
  R4709_RS07470 - 1431175..1431978 (+) 804 WP_000157656.1 ABC transporter ATP-binding protein -
  R4709_RS07475 treR 1432011..1432721 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4709_RS07480 treP 1432906..1434873 (+) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  R4709_RS07485 treC 1435051..1436676 (+) 1626 WP_050233417.1 alpha,alpha-phosphotrehalase -
  R4709_RS07490 - 1436932..1437180 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=895283 R4709_RS07475 WP_000760673.1 1432011..1432721(-) (treR) [Streptococcus pneumoniae strain 16H3071-2]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=895283 R4709_RS07475 WP_000760673.1 1432011..1432721(-) (treR) [Streptococcus pneumoniae strain 16H3071-2]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGTAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593