Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R4709_RS07175 Genome accession   NZ_CP137102
Coordinates   1390214..1391035 (+) Length   273 a.a.
NCBI ID   WP_277779660.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385214..1396035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS07150 - 1385574..1386182 (+) 609 WP_000083614.1 hypothetical protein -
  R4709_RS07155 - 1386175..1386585 (+) 411 WP_000595762.1 hypothetical protein -
  R4709_RS07160 ply 1386596..1388005 (+) 1410 WP_001284356.1 cholesterol-dependent cytolysin pneumolysin -
  R4709_RS07165 - 1388886..1389602 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4709_RS07170 - 1389726..1390197 (+) 472 Protein_1389 MarR family winged helix-turn-helix transcriptional regulator -
  R4709_RS07175 rcrP 1390214..1391035 (+) 822 WP_277779660.1 ABC transporter permease Regulator
  R4709_RS07180 - 1391228..1392073 (+) 846 Protein_1391 ATP-binding cassette domain-containing protein -
  R4709_RS07185 - 1392139..1392501 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R4709_RS07190 - 1392498..1393001 (+) 504 WP_000800944.1 phosphatase PAP2 family protein -
  R4709_RS07195 - 1393115..1393561 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R4709_RS07200 - 1393567..1394241 (+) 675 WP_000725744.1 LiaF transmembrane domain-containing protein -
  R4709_RS07205 - 1394402..1394593 (+) 192 WP_000291826.1 cell wall-binding protein -
  R4709_RS07210 - 1394600..1394680 (+) 81 WP_223200442.1 hypothetical protein -
  R4709_RS07215 - 1394878..1395177 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  R4709_RS07220 - 1395174..1395491 (+) 318 WP_000615767.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30621.23 Da        Isoelectric Point: 4.9837

>NTDB_id=895276 R4709_RS07175 WP_277779660.1 1390214..1391035(+) (rcrP) [Streptococcus pneumoniae strain 16H3071-2]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQSASMMMGMPFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLMRTTNDITQVQMLITMDLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=895276 R4709_RS07175 WP_277779660.1 1390214..1391035(+) (rcrP) [Streptococcus pneumoniae strain 16H3071-2]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGTCGGCAAGCATGATGATGGGAATGCCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGATGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGACTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.789

100

0.582