Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVB50_RS12165 Genome accession   NZ_CP154923
Coordinates   2218521..2219657 (-) Length   378 a.a.
NCBI ID   WP_068947494.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2213521..2224657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS12125 (AAVB50_12120) - 2214246..2214704 (+) 459 WP_198879180.1 YrhA family protein -
  AAVB50_RS12130 (AAVB50_12125) bsrG 2215009..2215125 (-) 117 WP_009967548.1 type I toxin-antitoxin system toxin BsrG -
  AAVB50_RS12135 (AAVB50_12130) yolA 2215357..2215824 (+) 468 WP_019712873.1 YolA family protein -
  AAVB50_RS12140 (AAVB50_12135) - 2215830..2216186 (+) 357 WP_072566416.1 hypothetical protein -
  AAVB50_RS12145 (AAVB50_12140) - 2216229..2216564 (-) 336 WP_159376906.1 hypothetical protein -
  AAVB50_RS12150 (AAVB50_12145) yolD 2216738..2217070 (+) 333 WP_345806164.1 YolD-like family protein -
  AAVB50_RS12155 (AAVB50_12150) uvrX 2217063..2218313 (+) 1251 WP_345806165.1 UV damage repair protein UvrX -
  AAVB50_RS12160 (AAVB50_12155) - 2218355..2218531 (-) 177 WP_019712878.1 hypothetical protein -
  AAVB50_RS12165 (AAVB50_12160) rapC 2218521..2219657 (-) 1137 WP_068947494.1 Rap family tetratricopeptide repeat protein Regulator
  AAVB50_RS12170 (AAVB50_12165) - 2219785..2220036 (-) 252 WP_017696899.1 phage holin -
  AAVB50_RS12175 (AAVB50_12170) - 2220058..2220450 (-) 393 WP_017696898.1 hypothetical protein -
  AAVB50_RS12180 (AAVB50_12175) - 2220566..2221633 (-) 1068 WP_345806166.1 N-acetylmuramoyl-L-alanine amidase family protein -
  AAVB50_RS12185 (AAVB50_12180) - 2221858..2222007 (-) 150 WP_120028283.1 XkdX family protein -
  AAVB50_RS12190 (AAVB50_12185) - 2222008..2222397 (-) 390 WP_345806167.1 hypothetical protein -
  AAVB50_RS12195 (AAVB50_12190) - 2222411..2224198 (-) 1788 WP_345806168.1 teichoic acid biosynthesis protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44847.08 Da        Isoelectric Point: 5.0660

>NTDB_id=895276 AAVB50_RS12165 WP_068947494.1 2218521..2219657(-) (rapC) [Bacillus subtilis strain FUA2233]
MEQMISSSKVGVKINEWYKYIRLFSVPDSEILKAEVEEEIRHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTLNEERPKIS
DLLEKIESSQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDYPEKAIPHFKDALDKAREIDMSRLIGSSLYNLGLCSFAEEAYEKAS
EYFKEGIRVYQDNGYEHSNRILDILLMLTKTTFKMRNHSEGISWCAHGLSLSKNLNDEIMAKMFEFIHALYVDNDNEKLN
SILNYLELKSMLSDVEDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=895276 AAVB50_RS12165 WP_068947494.1 2218521..2219657(-) (rapC) [Bacillus subtilis strain FUA2233]
TTGGAGCAGATGATCTCTTCTTCTAAAGTTGGAGTGAAAATAAATGAGTGGTATAAATACATAAGATTATTTAGTGTCCC
AGATTCGGAAATATTGAAAGCTGAGGTCGAGGAAGAAATAAGGCATATGAAAGAAGATCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAGCTGATGCTGGACTACCTTGAACCAAAAACATTGAACGAAGAACGACCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGTAGTCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGGGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAAATTGAAAGAGCTGAATTCCACTATAAAGTTGCAGAAATTTATTATCATATGAAGCAAACACATATGTCGATGCAC
CACATTGTTCAAGCAATCGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTTATCGG
ACTGAACTATTTGGATATGGACTACCCTGAAAAAGCGATCCCTCATTTTAAAGATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTTTACAATCTCGGCTTATGTTCCTTTGCTGAGGAAGCTTATGAAAAGGCATCT
GAGTACTTCAAGGAGGGCATTAGAGTATATCAGGATAATGGGTATGAACATTCAAATCGCATATTAGATATCTTACTTAT
GTTGACAAAAACCACTTTTAAAATGAGAAATCACTCCGAGGGAATTTCTTGGTGTGCACACGGTCTGTCTTTGTCCAAAA
ATTTAAACGATGAGATTATGGCAAAAATGTTTGAATTCATTCATGCCTTATATGTAGATAATGACAATGAAAAATTAAAT
TCAATTCTAAATTATTTAGAATTAAAGTCAATGCTTTCAGACGTGGAGGATTTAGCATCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGCTTATTATGAAAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(343-367)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.031

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.46