Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVB50_RS09675 Genome accession   NZ_CP154923
Coordinates   1790054..1790464 (+) Length   136 a.a.
NCBI ID   WP_160221688.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1785054..1795464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS09640 (AAVB50_09635) arsR 1785217..1785534 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  AAVB50_RS09645 (AAVB50_09640) yqcK 1785595..1786035 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  AAVB50_RS09650 (AAVB50_09645) acr3 1786058..1787098 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  AAVB50_RS09655 (AAVB50_09650) arsC 1787110..1787529 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  AAVB50_RS09660 (AAVB50_09655) - 1787884..1788062 (+) 179 Protein_1836 hypothetical protein -
  AAVB50_RS09665 (AAVB50_09660) spoIVCA 1788020..1789480 (+) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  AAVB50_RS09670 (AAVB50_09665) - 1789511..1789858 (-) 348 Protein_1838 sigma-70 family RNA polymerase sigma factor -
  AAVB50_RS09675 (AAVB50_09670) nucA/comI 1790054..1790464 (+) 411 WP_160221688.1 sporulation-specific Dnase NucB Machinery gene
  AAVB50_RS09680 (AAVB50_09675) yqeB 1790497..1791219 (-) 723 WP_345806059.1 DUF308 domain-containing protein -
  AAVB50_RS09685 (AAVB50_09680) gnd 1791471..1792364 (+) 894 WP_345806060.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  AAVB50_RS09690 (AAVB50_09685) yqeD 1792383..1793009 (-) 627 WP_038427798.1 TVP38/TMEM64 family protein -
  AAVB50_RS09695 (AAVB50_09690) cwlH 1793196..1793948 (+) 753 WP_087961324.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  AAVB50_RS09700 (AAVB50_09695) yqeF 1794200..1794931 (+) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  AAVB50_RS09705 (AAVB50_09700) - 1795237..1795377 (-) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14994.06 Da        Isoelectric Point: 5.1853

>NTDB_id=895255 AAVB50_RS09675 WP_160221688.1 1790054..1790464(+) (nucA/comI) [Bacillus subtilis strain FUA2233]
MKKWMAGLFLAAAVLLCLMVPQQIQGASLYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=895255 AAVB50_RS09675 WP_160221688.1 1790054..1790464(+) (nucA/comI) [Bacillus subtilis strain FUA2233]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529