Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVB50_RS09590 Genome accession   NZ_CP154923
Coordinates   1775618..1776745 (-) Length   375 a.a.
NCBI ID   WP_015714307.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770618..1781745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS09555 (AAVB50_09550) - 1771549..1772028 (+) 480 WP_004399085.1 hypothetical protein -
  AAVB50_RS09560 (AAVB50_09555) - 1772044..1772406 (+) 363 WP_003229947.1 hypothetical protein -
  AAVB50_RS09565 (AAVB50_09560) - 1772403..1772549 (-) 147 WP_009967791.1 hypothetical protein -
  AAVB50_RS09570 (AAVB50_09565) yqcF 1772667..1773245 (-) 579 WP_015714310.1 type VII secretion system immunity protein YqcF -
  AAVB50_RS09575 (AAVB50_09570) yqcG 1773260..1774855 (-) 1596 WP_204551337.1 LXG family T7SS effector endonuclease toxin YqcG -
  AAVB50_RS09580 (AAVB50_09575) - 1775225..1775384 (-) 160 Protein_1820 hypothetical protein -
  AAVB50_RS09585 (AAVB50_09580) phrE 1775494..1775628 (-) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  AAVB50_RS09590 (AAVB50_09585) rapC 1775618..1776745 (-) 1128 WP_015714307.1 response regulator aspartate phosphatase RapE Regulator
  AAVB50_RS09595 (AAVB50_09590) - 1777053..1777718 (+) 666 WP_015714306.1 CotZ-related putative spore coat protein -
  AAVB50_RS09600 (AAVB50_09595) - 1777795..1778142 (+) 348 WP_015714305.1 S-Ena type endospore appendage -
  AAVB50_RS09605 (AAVB50_09600) - 1778201..1778767 (-) 567 WP_250629422.1 hypothetical protein -
  AAVB50_RS09610 (AAVB50_09605) - 1778694..1779086 (+) 393 WP_230488262.1 hypothetical protein -
  AAVB50_RS09615 (AAVB50_09610) - 1779617..1780612 (-) 996 WP_029318099.1 acryloyl-CoA reductase -
  AAVB50_RS09620 (AAVB50_09615) - 1780770..1781363 (+) 594 WP_015714302.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44640.47 Da        Isoelectric Point: 7.5547

>NTDB_id=895254 AAVB50_RS09590 WP_015714307.1 1775618..1776745(-) (rapC) [Bacillus subtilis strain FUA2233]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTMPSDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=895254 AAVB50_RS09590 WP_015714307.1 1775618..1776745(-) (rapC) [Bacillus subtilis strain FUA2233]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGTGATATAGAGGTTATGGAAGAAGATCAAGATTTGCTTATTTATTATCAAT
TAATGGCCTTCCGCCATAAAATCATGTTGGAATACACGATGCCATCCGATGAAAACCGAATGGAACTTTCAGAATATTTA
AAGAAAATCGAAGGGCATAAGAAGAAGCTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATATAACATCTATAAAAAACACGAGCTTTATTCTGTTCGGCGTATACAGTGCCATTTTGTCATTGCCGGTAACTA
TGATGACCTTGAAAATCATGAGAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCTGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGTTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCATTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATTAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTC
TCTCGTTTAGAGAATGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384