Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4709_RS05440 Genome accession   NZ_CP137102
Coordinates   1054480..1055238 (-) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1049480..1060238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS05415 pth 1049513..1050082 (-) 570 WP_000163928.1 aminoacyl-tRNA hydrolase -
  R4709_RS05420 ychF 1050153..1051268 (-) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4709_RS05425 - 1051352..1051546 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4709_RS05430 dnaN 1051611..1052747 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4709_RS05435 dnaA 1052906..1054267 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4709_RS05440 spo0J 1054480..1055238 (-) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  R4709_RS05445 htrA 1055296..1056477 (-) 1182 WP_000681601.1 S1C family serine protease Regulator
  R4709_RS05450 rlmH 1056660..1057139 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4709_RS05460 comC/comC1 1057421..1057546 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4709_RS05465 comD/comD1 1057567..1058892 (+) 1326 WP_317802303.1 competence system sensor histidine kinase ComD Regulator
  R4709_RS05470 comE 1058889..1059641 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=895246 R4709_RS05440 WP_000410383.1 1054480..1055238(-) (spo0J) [Streptococcus pneumoniae strain 16H3071-2]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895246 R4709_RS05440 WP_000410383.1 1054480..1055238(-) (spo0J) [Streptococcus pneumoniae strain 16H3071-2]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504