Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AAVB50_RS00395 Genome accession   NZ_CP154923
Coordinates   40854..41084 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain FUA2233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35854..46084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS00385 (AAVB50_00385) spoVT 36579..37115 (-) 537 WP_003218365.1 stage V sporulation protein T -
  AAVB50_RS00390 (AAVB50_00390) mfd 37251..40784 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  AAVB50_RS00395 (AAVB50_00395) subA/fin 40854..41084 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  AAVB50_RS00400 (AAVB50_00400) pth 41144..41710 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  AAVB50_RS00405 (AAVB50_00405) ctc 41817..42431 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AAVB50_RS00410 (AAVB50_00410) prs 42516..43469 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  AAVB50_RS00415 (AAVB50_00415) glmU 43492..44862 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AAVB50_RS00420 (AAVB50_00420) spoVG 45055..45348 (-) 294 WP_003218346.1 septation regulator SpoVG -
  AAVB50_RS00425 (AAVB50_00425) ridA 45543..45920 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=895202 AAVB50_RS00395 WP_003243417.1 40854..41084(-) (subA/fin) [Bacillus subtilis strain FUA2233]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=895202 AAVB50_RS00395 WP_003243417.1 40854..41084(-) (subA/fin) [Bacillus subtilis strain FUA2233]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1