Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   R4710_RS07695 Genome accession   NZ_CP137101
Coordinates   1446556..1448538 (+) Length   660 a.a.
NCBI ID   WP_050245269.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441556..1453538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS07670 rfbA 1441647..1442516 (+) 870 WP_000676150.1 glucose-1-phosphate thymidylyltransferase RfbA -
  R4710_RS07675 - 1442517..1443110 (+) 594 WP_000131455.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  R4710_RS07680 rfbB 1443123..1444172 (+) 1050 WP_000141508.1 dTDP-glucose 4,6-dehydratase -
  R4710_RS07685 rfbD 1444238..1445089 (+) 852 WP_000600910.1 dTDP-4-dehydrorhamnose reductase -
  R4710_RS07690 glf 1445152..1446229 (+) 1078 Protein_1475 UDP-galactopyranose mutase -
  R4710_RS07695 amiA3 1446556..1448538 (+) 1983 WP_050245269.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73067.68 Da        Isoelectric Point: 4.7283

>NTDB_id=895202 R4710_RS07695 WP_050245269.1 1446556..1448538(+) (amiA3) [Streptococcus pneumoniae strain 16P2012-2]
MKSSKLFALAGVTLLAATTLAACSGSGSSTKGEKTFSYIYETDPDNLNYLTTAKAATANITSNVVDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAAVKAQDFVTGLKYAADKKSDALYLVQESIKGLDAYVKGEIKDFSQVG
IKALDEQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWD
KDNVHVDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSITYLVGTNIDRQSYKYTSK
TSEEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGETGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDV
NLADSQDGLYNPEKAKAEFAKAKSALQAEGVTFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGADNVIIDIQQLQKDEV
NNITYFAENAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDEAT
DVAKRYDKYAAAQAWLTDSALIIPTTSRTGRPILSKMVPFTIPFALSGNKGTSEPVLYKYLELQDKAVTVDEYQKAQEKW
MKEKEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=895202 R4710_RS07695 WP_050245269.1 1446556..1448538(+) (amiA3) [Streptococcus pneumoniae strain 16P2012-2]
ATGAAAAGTTCAAAACTATTTGCCCTTGCGGGCGTGACATTATTGGCGGCGACTACTTTAGCTGCATGCTCTGGATCAGG
TTCAAGCACTAAAGGTGAGAAGACATTCTCATACATTTATGAGACAGACCCTGATAACCTCAACTATTTGACAACTGCTA
AGGCTGCGACAGCAAATATTACCAGTAACGTGGTTGATGGTTTGCTAGAAAATGATCGCTACGGGAACTTTGTGCCGTCT
ATGGCTGAGGATTGGTCTGTATCCAAGGATGGATTGACTTACACTTATACTATCCGTAAGGATGCAAAATGGTATACTTC
TGAAGGTGAAGAATACGCGGCAGTCAAAGCTCAAGACTTTGTAACAGGATTAAAATATGCTGCTGATAAAAAATCAGATG
CTCTTTACCTTGTTCAAGAATCAATCAAAGGCTTGGATGCCTATGTAAAAGGGGAAATCAAAGATTTCTCACAAGTAGGA
ATTAAGGCTCTGGATGAACAGACAGTTCAGTACACTTTGAACAAACCAGAAAGCTTCTGGAATTCTAAGACAACCATGGG
TGTGCTTGCGCCAGTTAATGAAGAGTTTTTGAATTCAAAAGGAGATGATTTTGCCAAAGCTACGGATCCAAGTAGTCTCT
TGTATAACGGTCCTTATTTGTTGAAATCCATTGTGACCAAATCCTCTGTTGAATTTGCGAAAAATCCGAACTACTGGGAT
AAGGACAATGTGCATGTTGACAAAGTTAAATTGTCATTCTGGGATGGTCAAGATACCAGCAAACCTGCAGAAAACTTTAA
AGATGGTAGCCTTACAGCAGCTCGTCTCTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAGGACAATA
TTGTCTATACTCAACAAGACTCTATTACGTATCTAGTTGGTACAAATATTGACCGTCAGTCCTATAAATATACATCTAAG
ACCAGTGAAGAACAAAAAACATCTACGAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCATTTGGATTTGA
CCGTACAGCCTATGCCTCTCAGTTGAATGGAGAAACTGGAGCAAGCAAAATCTTGCGTAATCTCTTTGTGCCACCAACAT
TTGTTCAAGCAGATGGTAAAAACTTTGGCGATATGGTCAAAGAGAAATTGGTCACTTATGGGGATGAATGGAAGGATGTT
AATCTTGCAGATTCTCAGGATGGTCTTTACAATCCAGAAAAAGCCAAGGCTGAATTTGCTAAAGCTAAATCAGCCTTACA
AGCAGAAGGTGTGACATTCCCAATTCATTTGGATATGCCAGTTGACCAAACAGCAACTACAAAAGTTCAGCGCGTCCAAT
CTATGAAACAATCCTTGGAAGCAACTTTAGGAGCTGATAATGTCATTATTGATATCCAACAACTACAAAAAGACGAAGTA
AACAATATTACATATTTTGCTGAAAATGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTT
TGCCGATCCATCAACCTACCTTGATATTATCAAACCTTCTGTAGGAGAAAGTACTAAAACATATTTAGGGTTTGACTCAG
GGGAAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAGGCTGGTGATGAGGCTACA
GATGTTGCTAAACGCTATGATAAATACGCTGCAGCCCAAGCTTGGTTGACAGATAGTGCTTTGATTATTCCAACTACATC
TCGTACAGGGCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTG
AACCAGTCTTATATAAATACTTGGAACTTCAAGACAAGGCAGTCACTGTAGATGAATACCAAAAAGCTCAGGAAAAATGG
ATGAAAGAAAAAGAAGAGTCTAATAAAAAGGCTCAAGAAGATCTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.245

100

0.583
  amiA3 Streptococcus thermophilus LMG 18311

57.943

100

0.58
  amiA Streptococcus salivarius strain HSISS4

57.943

100

0.58