Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R4710_RS06070 Genome accession   NZ_CP137101
Coordinates   1134879..1136240 (+) Length   453 a.a.
NCBI ID   WP_074017595.1    Uniprot ID   A0A237IXT5
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1129879..1141240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS06010 - 1129987..1130103 (+) 117 Protein_1138 dihydrodipicolinate reductase -
  R4710_RS06015 - 1130084..1130287 (+) 204 WP_001091107.1 hypothetical protein -
  R4710_RS06020 - 1130290..1130640 (+) 351 WP_000852249.1 hypothetical protein -
  R4710_RS06025 - 1130650..1131066 (+) 417 WP_001165344.1 phage holin family protein -
  R4710_RS06030 - 1131070..1131402 (+) 333 WP_001186229.1 phage holin -
  R4710_RS06035 - 1131406..1132362 (+) 957 WP_000350504.1 N-acetylmuramoyl-L-alanine amidase family protein -
  R4710_RS06040 - 1132500..1132679 (-) 180 WP_001209433.1 hypothetical protein -
  R4710_RS06045 - 1132821..1132970 (-) 150 WP_001030863.1 hypothetical protein -
  R4710_RS06050 tadA 1133251..1133718 (+) 468 WP_000291874.1 tRNA adenosine(34) deaminase TadA -
  R4710_RS06060 - 1133905..1134348 (+) 444 WP_000701993.1 dUTP diphosphatase -
  R4710_RS06065 - 1134350..1134865 (+) 516 WP_000691237.1 histidine phosphatase family protein -
  R4710_RS06070 radA 1134879..1136240 (+) 1362 WP_074017595.1 DNA repair protein RadA Machinery gene
  R4710_RS06075 - 1136313..1136810 (+) 498 WP_001809263.1 carbonic anhydrase -
  R4710_RS06080 - 1136835..1137635 (+) 801 WP_061630116.1 PrsW family intramembrane metalloprotease -
  R4710_RS06085 - 1137780..1138748 (+) 969 WP_000010163.1 ribose-phosphate diphosphokinase -
  R4710_RS06090 - 1138885..1139163 (-) 279 Protein_1153 transposase family protein -
  R4710_RS06095 - 1139292..1140202 (-) 911 Protein_1154 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49432.95 Da        Isoelectric Point: 6.5137

>NTDB_id=895198 R4710_RS06070 WP_074017595.1 1134879..1136240(+) (radA) [Streptococcus pneumoniae strain 16P2012-2]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITLPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=895198 R4710_RS06070 WP_074017595.1 1134879..1136240(+) (radA) [Streptococcus pneumoniae strain 16P2012-2]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCATCAATGTCAATCGAACTAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTGCGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8RXC

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

100

100

1
  radA Streptococcus pneumoniae D39

100

100

1
  radA Streptococcus pneumoniae R6

100

100

1
  radA Streptococcus pneumoniae TIGR4

100

100

1
  radA Streptococcus mitis NCTC 12261

99.558

100

0.996
  radA Streptococcus mitis SK321

99.558

100

0.996
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631