Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4710_RS05700 Genome accession   NZ_CP137101
Coordinates   1073520..1074278 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068520..1079278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS05670 comE 1069117..1069869 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R4710_RS05675 comD/comD1 1069866..1071191 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R4710_RS05680 comC/comC1 1071212..1071337 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4710_RS05690 rlmH 1071619..1072098 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4710_RS05695 htrA 1072281..1073462 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  R4710_RS05700 spo0J 1073520..1074278 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  R4710_RS05705 dnaA 1074491..1075852 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4710_RS05710 dnaN 1076011..1077147 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4710_RS05715 - 1077212..1077406 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4710_RS05720 ychF 1077490..1078605 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4710_RS05725 pth 1078676..1079245 (+) 570 WP_000163928.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=895194 R4710_RS05700 WP_000410383.1 1073520..1074278(+) (spo0J) [Streptococcus pneumoniae strain 16P2012-2]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895194 R4710_RS05700 WP_000410383.1 1073520..1074278(+) (spo0J) [Streptococcus pneumoniae strain 16P2012-2]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504