Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAVB74_RS21275 Genome accession   NZ_CP154920
Coordinates   4013147..4013788 (-) Length   213 a.a.
NCBI ID   WP_088325353.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2232     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4008147..4018788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS21260 (AAVB74_21260) ydfK 4008648..4009337 (+) 690 WP_015252719.1 DUF554 domain-containing protein -
  AAVB74_RS21265 (AAVB74_21265) cesA 4009540..4010442 (+) 903 WP_088325355.1 carboxylesterase -
  AAVB74_RS21270 (AAVB74_21270) ydfJ 4010857..4013031 (-) 2175 WP_088325354.1 MMPL family transporter -
  AAVB74_RS21275 (AAVB74_21275) vraR 4013147..4013788 (-) 642 WP_088325353.1 two-component system response regulator YdfI Regulator
  AAVB74_RS21280 (AAVB74_21280) ydfH 4013781..4015004 (-) 1224 WP_088325352.1 two-component system sensor histidine kinase YdfH -
  AAVB74_RS21285 (AAVB74_21285) - 4015272..4015415 (+) 144 WP_038427427.1 hypothetical protein -
  AAVB74_RS21290 (AAVB74_21290) - 4015412..4015591 (+) 180 WP_010886421.1 hypothetical protein -
  AAVB74_RS21295 (AAVB74_21295) ydfG 4015677..4016120 (+) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  AAVB74_RS21300 (AAVB74_21300) ydfF 4016200..4016880 (-) 681 WP_345805615.1 winged helix-turn-helix domain-containing protein -
  AAVB74_RS21305 (AAVB74_21305) ydfE 4016970..4017593 (+) 624 WP_088325350.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23929.91 Da        Isoelectric Point: 5.7463

>NTDB_id=895185 AAVB74_RS21275 WP_088325353.1 4013147..4013788(-) (vraR) [Bacillus subtilis strain FUA2232]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGISERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIGN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=895185 AAVB74_RS21275 WP_088325353.1 4013147..4013788(-) (vraR) [Bacillus subtilis strain FUA2232]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACACCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCATCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAGTTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGGCAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.967

99.061

0.366