Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AAVB74_RS14755 Genome accession   NZ_CP154920
Coordinates   2775848..2776279 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain FUA2232     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2770848..2781279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS14745 (AAVB74_14745) hexA 2772331..2774907 (-) 2577 WP_088325891.1 DNA mismatch repair protein MutS Machinery gene
  AAVB74_RS14750 (AAVB74_14750) cotE 2775040..2775585 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  AAVB74_RS14755 (AAVB74_14755) ymcA 2775848..2776279 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AAVB74_RS14760 (AAVB74_14760) miaB 2776281..2777810 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AAVB74_RS14765 (AAVB74_14765) kbl 2777958..2779136 (-) 1179 WP_014664025.1 glycine C-acetyltransferase -
  AAVB74_RS14770 (AAVB74_14770) tdh 2779149..2780192 (-) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  AAVB74_RS14775 (AAVB74_14775) spoVS 2780458..2780718 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=895136 AAVB74_RS14755 WP_003231834.1 2775848..2776279(-) (ymcA) [Bacillus subtilis strain FUA2232]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=895136 AAVB74_RS14755 WP_003231834.1 2775848..2776279(-) (ymcA) [Bacillus subtilis strain FUA2232]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1