Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R4703_RS03900 Genome accession   NZ_CP137100
Coordinates   719684..720715 (-) Length   343 a.a.
NCBI ID   WP_023396452.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LYP     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 714684..725715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS03845 - 714775..715536 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  R4703_RS03850 ytpR 715569..716195 (-) 627 WP_000578302.1 YtpR family tRNA-binding protein -
  R4703_RS03855 - 716211..716528 (-) 318 WP_000615774.1 thioredoxin family protein -
  R4703_RS03860 - 716525..716824 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  R4703_RS03865 - 716918..717049 (+) 132 WP_001811306.1 hypothetical protein -
  R4703_RS03875 - 717161..717306 (-) 146 Protein_749 cell wall-binding protein -
  R4703_RS03880 - 717518..718192 (-) 675 WP_000725721.1 LiaF transmembrane domain-containing protein -
  R4703_RS03885 - 718197..718643 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R4703_RS03890 - 718757..719260 (-) 504 WP_000800939.1 phosphatase PAP2 family protein -
  R4703_RS03895 - 719257..719619 (-) 363 WP_000078801.1 DUF2200 domain-containing protein -
  R4703_RS03900 rcrQ 719684..720715 (-) 1032 WP_023396452.1 ABC transporter ATP-binding protein Regulator
  R4703_RS03905 rcrP 720722..721543 (-) 822 WP_023396453.1 ABC transporter permease Regulator
  R4703_RS03910 - 721559..722029 (-) 471 WP_000360533.1 MarR family winged helix-turn-helix transcriptional regulator -
  R4703_RS03915 - 722153..722869 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4703_RS03920 ply 723750..725165 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  R4703_RS03925 - 725176..725586 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37900.12 Da        Isoelectric Point: 4.4301

>NTDB_id=895085 R4703_RS03900 WP_023396452.1 719684..720715(-) (rcrQ) [Streptococcus pneumoniae strain LYP]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSVTAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIACALLKDASLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=895085 R4703_RS03900 WP_023396452.1 719684..720715(-) (rcrQ) [Streptococcus pneumoniae strain LYP]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGTGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACTGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-117)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

79.464

65.306

0.519
  rcrP Streptococcus mutans UA159

37.572

100

0.379