Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R4703_RS03625 Genome accession   NZ_CP137100
Coordinates   681518..682585 (-) Length   355 a.a.
NCBI ID   WP_000159562.1    Uniprot ID   B1I897
Organism   Streptococcus pneumoniae strain LYP     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 676518..687585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS03610 treR 678315..679025 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4703_RS03615 - 679180..680506 (+) 1327 Protein_720 ISL3 family transposase -
  R4703_RS03620 amiF 680581..681507 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  R4703_RS03625 amiE 681518..682585 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  R4703_RS03630 amiD 682594..683520 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R4703_RS03635 amiC 683520..685016 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  R4703_RS03640 amiA3 685083..687062 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39504.11 Da        Isoelectric Point: 4.8764

>NTDB_id=895080 R4703_RS03625 WP_000159562.1 681518..682585(-) (amiE) [Streptococcus pneumoniae strain LYP]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKEWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=895080 R4703_RS03625 WP_000159562.1 681518..682585(-) (amiE) [Streptococcus pneumoniae strain LYP]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTTGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGTATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGAGTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCGATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1I897

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.887

100

0.879
  amiE Streptococcus thermophilus LMG 18311

86.197

100

0.862
  amiE Streptococcus thermophilus LMD-9

86.197

100

0.862
  oppD Streptococcus mutans UA159

54.261

99.155

0.538