Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAYR29_RS20230 Genome accession   NZ_CP154918
Coordinates   3772383..3773516 (+) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3767383..3778516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS20200 (AAYR29_20200) ywmC 3768192..3768875 (+) 684 WP_024571497.1 VWA domain-containing protein -
  AAYR29_RS20205 (AAYR29_20205) - 3769006..3769146 (+) 141 WP_014478246.1 hypothetical protein -
  AAYR29_RS20210 (AAYR29_20210) ywmD 3769199..3769873 (+) 675 WP_003243553.1 VWA domain-containing protein -
  AAYR29_RS20215 (AAYR29_20215) - 3769968..3770129 (+) 162 WP_003227706.1 hypothetical protein -
  AAYR29_RS20220 (AAYR29_20220) fdhD 3770362..3771150 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  AAYR29_RS20225 (AAYR29_20225) moaA 3771166..3772191 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  AAYR29_RS20230 (AAYR29_20230) rapC 3772383..3773516 (+) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  AAYR29_RS20235 (AAYR29_20235) - 3773672..3774151 (+) 480 WP_345805813.1 hypothetical protein -
  AAYR29_RS20240 (AAYR29_20240) csbD 3774224..3774412 (+) 189 WP_003227718.1 stress response protein CsbD -
  AAYR29_RS20245 (AAYR29_20245) - 3774625..3774849 (+) 225 Protein_3897 urea ABC transporter substrate-binding protein -
  AAYR29_RS20250 (AAYR29_20250) - 3775096..3775254 (+) 159 WP_120363539.1 hypothetical protein -
  AAYR29_RS20255 (AAYR29_20255) ureA 3775445..3775762 (+) 318 WP_345805814.1 urease subunit gamma -
  AAYR29_RS20260 (AAYR29_20260) ureB 3775759..3776133 (+) 375 WP_015251023.1 urease subunit beta -
  AAYR29_RS20265 (AAYR29_20265) ureC 3776130..3777839 (+) 1710 WP_123373663.1 urease subunit alpha -
  AAYR29_RS20270 (AAYR29_20270) ywnA 3777974..3778375 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=895033 AAYR29_RS20230 WP_015251020.1 3772383..3773516(+) (rapC) [Bacillus subtilis strain FUA2231]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=895033 AAYR29_RS20230 WP_015251020.1 3772383..3773516(+) (rapC) [Bacillus subtilis strain FUA2231]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424