Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AAYR29_RS17600 Genome accession   NZ_CP154918
Coordinates   3270298..3270528 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain FUA2231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3265298..3275528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS17590 (AAYR29_17590) spoVT 3266023..3266559 (-) 537 WP_003218365.1 stage V sporulation protein T -
  AAYR29_RS17595 (AAYR29_17595) mfd 3266695..3270228 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  AAYR29_RS17600 (AAYR29_17600) subA/fin 3270298..3270528 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  AAYR29_RS17605 (AAYR29_17605) pth 3270588..3271154 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  AAYR29_RS17610 (AAYR29_17610) ctc 3271261..3271875 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AAYR29_RS17615 (AAYR29_17615) prs 3271960..3272913 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  AAYR29_RS17620 (AAYR29_17620) glmU 3272936..3274306 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AAYR29_RS17625 (AAYR29_17625) spoVG 3274499..3274792 (-) 294 WP_003218346.1 septation regulator SpoVG -
  AAYR29_RS17630 (AAYR29_17630) ridA 3274987..3275364 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=895016 AAYR29_RS17600 WP_003243417.1 3270298..3270528(-) (subA/fin) [Bacillus subtilis strain FUA2231]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=895016 AAYR29_RS17600 WP_003243417.1 3270298..3270528(-) (subA/fin) [Bacillus subtilis strain FUA2231]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1