Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R4714_RS03725 Genome accession   NZ_CP137099
Coordinates   696749..697915 (-) Length   388 a.a.
NCBI ID   WP_001085463.1    Uniprot ID   A0A062WS62
Organism   Streptococcus pneumoniae strain 20824-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 691749..702915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS03695 - 692082..692507 (-) 426 WP_000204067.1 hypothetical protein -
  R4714_RS03700 - 692636..692995 (-) 360 WP_000749821.1 ImmA/IrrE family metallo-endopeptidase -
  R4714_RS03705 - 693041..693247 (-) 207 WP_000366088.1 hypothetical protein -
  R4714_RS03710 - 693234..693395 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  R4714_RS03715 lytA 693741..694697 (-) 957 WP_001862690.1 N-acetylmuramoyl-L-alanine amidase LytA -
  R4714_RS03720 - 695073..696443 (-) 1371 WP_050311830.1 MATE family efflux transporter -
  R4714_RS03725 recA 696749..697915 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  R4714_RS03730 cinA 697970..699226 (-) 1257 WP_000642709.1 competence/damage-inducible protein A Machinery gene
  R4714_RS03735 brpA 699310..700326 (-) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  R4714_RS03740 - 700334..700852 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  R4714_RS03745 tsaE 700842..701285 (-) 444 WP_000288244.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  R4714_RS03750 comM 701371..701991 (-) 621 WP_000839908.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41953.77 Da        Isoelectric Point: 4.8403

>NTDB_id=895009 R4714_RS03725 WP_001085463.1 696749..697915(-) (recA) [Streptococcus pneumoniae strain 20824-4]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=895009 R4714_RS03725 WP_001085463.1 696749..697915(-) (recA) [Streptococcus pneumoniae strain 20824-4]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTACGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WS62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

99.742

100

0.997
  recA Streptococcus pneumoniae D39

99.742

100

0.997
  recA Streptococcus pneumoniae R6

99.742

100

0.997
  recA Streptococcus pneumoniae TIGR4

99.742

100

0.997
  recA Streptococcus mitis NCTC 12261

94.33

100

0.943
  recA Streptococcus mitis SK321

93.814

100

0.938
  recA Streptococcus mutans UA159

83.204

99.742

0.83
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.409

90.722

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

89.175

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Glaesserella parasuis strain SC1401

57.641

96.134

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Neisseria gonorrhoeae strain FA1090

60.177

87.371

0.526
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Helicobacter pylori 26695

56.125

90.464

0.508
  recA Helicobacter pylori strain NCTC11637

56.125

90.464

0.508
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49