Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AAYR29_RS15070 Genome accession   NZ_CP154918
Coordinates   2796857..2797291 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain FUA2231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2791857..2802291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS15055 (AAYR29_15055) epsK 2792486..2793337 (-) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -
  AAYR29_RS15060 (AAYR29_15060) epsJ 2793318..2794406 (-) 1089 WP_345805631.1 lipoprotein YdaJ -
  AAYR29_RS15065 (AAYR29_15065) topB 2794609..2796792 (-) 2184 WP_029317313.1 DNA topoisomerase III -
  AAYR29_RS15070 (AAYR29_15070) lrpC 2796857..2797291 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AAYR29_RS15075 (AAYR29_15075) ydzA 2797476..2797766 (+) 291 WP_224912742.1 DUF3817 domain-containing protein -
  AAYR29_RS15080 (AAYR29_15080) amj 2797811..2798620 (-) 810 WP_003234394.1 lipid II flippase Amj -
  AAYR29_RS15085 (AAYR29_15085) ydaG 2799126..2799548 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  AAYR29_RS15090 (AAYR29_15090) ydaF 2799626..2800177 (-) 552 WP_061891248.1 GNAT family protein -
  AAYR29_RS15095 (AAYR29_15095) lyxE 2800263..2800766 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AAYR29_RS15100 (AAYR29_15100) ydaD 2800782..2801642 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=894997 AAYR29_RS15070 WP_003246585.1 2796857..2797291(-) (lrpC) [Bacillus subtilis strain FUA2231]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=894997 AAYR29_RS15070 WP_003246585.1 2796857..2797291(-) (lrpC) [Bacillus subtilis strain FUA2231]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
GAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1