Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAYR29_RS14525 Genome accession   NZ_CP154918
Coordinates   2702858..2703499 (-) Length   213 a.a.
NCBI ID   WP_088325353.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2697858..2708499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS14510 (AAYR29_14510) ydfK 2698359..2699048 (+) 690 WP_015252719.1 DUF554 domain-containing protein -
  AAYR29_RS14515 (AAYR29_14515) cesA 2699251..2700153 (+) 903 WP_088325355.1 carboxylesterase -
  AAYR29_RS14520 (AAYR29_14520) ydfJ 2700568..2702742 (-) 2175 WP_088325354.1 MMPL family transporter -
  AAYR29_RS14525 (AAYR29_14525) vraR 2702858..2703499 (-) 642 WP_088325353.1 two-component system response regulator YdfI Regulator
  AAYR29_RS14530 (AAYR29_14530) ydfH 2703492..2704715 (-) 1224 WP_088325352.1 two-component system sensor histidine kinase YdfH -
  AAYR29_RS14535 (AAYR29_14535) - 2704983..2705126 (+) 144 WP_038427427.1 hypothetical protein -
  AAYR29_RS14540 (AAYR29_14540) - 2705123..2705302 (+) 180 WP_010886421.1 hypothetical protein -
  AAYR29_RS14545 (AAYR29_14545) ydfG 2705388..2705831 (+) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  AAYR29_RS14550 (AAYR29_14550) ydfF 2705911..2706591 (-) 681 WP_345805615.1 winged helix-turn-helix domain-containing protein -
  AAYR29_RS14555 (AAYR29_14555) ydfE 2706681..2707304 (+) 624 WP_088325350.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23929.91 Da        Isoelectric Point: 5.7463

>NTDB_id=894996 AAYR29_RS14525 WP_088325353.1 2702858..2703499(-) (vraR) [Bacillus subtilis strain FUA2231]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGISERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIGN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=894996 AAYR29_RS14525 WP_088325353.1 2702858..2703499(-) (vraR) [Bacillus subtilis strain FUA2231]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACACCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCATCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAGTTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGGCAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.967

99.061

0.366