Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   R4535_RS15415 Genome accession   NZ_CP137092
Coordinates   583534..584703 (-) Length   389 a.a.
NCBI ID   WP_001039905.1    Uniprot ID   -
Organism   Vibrio cholerae strain DL4211     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578534..589703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS15410 (R4535_15385) cqsS 581389..583449 (+) 2061 WP_001885480.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  R4535_RS15415 (R4535_15390) cqsA 583534..584703 (-) 1170 WP_001039905.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  R4535_RS15420 (R4535_15395) - 584900..585862 (-) 963 WP_076025071.1 TDT family transporter -
  R4535_RS15425 (R4535_15400) clcA 586009..587415 (-) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  R4535_RS15430 (R4535_15405) - 587882..588871 (+) 990 WP_076025070.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43788.05 Da        Isoelectric Point: 6.6781

>NTDB_id=894983 R4535_RS15415 WP_001039905.1 583534..584703(-) (cqsA) [Vibrio cholerae strain DL4211]
MNKPQLPDFIQDKIDHFIENFIAINKNGKHLVLGKHASSEDIILQSNDYLSLANHPLIKAHLAKSLLEEHQSLFMSAIFL
QSDYDKPPIESRLAKFTGFKECLLSQSGWCANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAKIHPFMHNNCDHLRT
LIQRYGPGIIAVDSIYSTIGTLAPLTELVRISQEYGCALLVDESHSLGTHGPKGSGLLAELNLTDEVHFMTASLAKTFSY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLESTLEIIECSDDKRKKLERMSRKLRIGLTQLGLTIRSESQIISL
ETGDERNTEKVRDFLESNGLFGSVFCRPATTKNKNIIRFSLNSDVTDEQITRIIEICSDAVKRSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=894983 R4535_RS15415 WP_001039905.1 583534..584703(-) (cqsA) [Vibrio cholerae strain DL4211]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGGACAAAATCGACCACTTTATTGAAAACTTTATTGCCATAAACAAAAA
TGGAAAACATTTAGTGCTGGGTAAGCATGCCAGCAGTGAGGATATTATTTTACAAAGCAATGATTATCTCTCCTTGGCTA
ATCATCCATTGATTAAAGCTCACTTAGCAAAGTCATTACTAGAAGAACATCAAAGCCTGTTTATGTCAGCGATCTTTTTA
CAAAGTGATTATGACAAACCACCAATCGAAAGCCGACTGGCTAAATTCACAGGTTTCAAAGAATGTCTGTTATCCCAATC
GGGCTGGTGCGCTAACGTGGGCCTTTTACAGACAATTTGCCAACCGAATACCAATGTATACATCGATTTCTTTGCTCACA
TGTCACTGTGGGAAGGAGCACGTTATGCGAATGCAAAAATACACCCTTTTATGCATAACAACTGCGATCATTTACGCACA
TTAATTCAACGTTACGGCCCTGGAATTATAGCTGTTGACTCCATCTATAGCACAATAGGAACTCTGGCACCGTTAACAGA
ATTAGTCAGAATCAGTCAGGAGTACGGTTGTGCTTTGTTAGTGGATGAATCTCATTCTCTAGGCACGCATGGTCCGAAAG
GTTCTGGTTTACTCGCGGAGTTGAATCTCACTGATGAGGTGCATTTTATGACTGCCAGTTTAGCCAAAACGTTTTCCTAT
CGAGCTGGAGCCATTTGGTGCAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGCTCTAC
TTTGCTGCCCTATGAAGCAGCTGGATTGGAAAGTACATTGGAAATTATTGAATGTTCAGATGACAAACGAAAAAAACTAG
AACGTATGTCGAGAAAATTACGTATTGGATTAACCCAACTTGGCTTAACCATCCGCAGTGAAAGCCAGATTATCAGCCTA
GAAACTGGAGATGAAAGAAATACCGAAAAAGTGCGTGACTTCCTAGAGAGTAATGGATTATTTGGGTCAGTATTTTGTAG
GCCGGCCACCACAAAAAATAAAAACATTATTCGTTTCTCACTTAATAGTGATGTGACCGATGAACAGATAACGAGAATAA
TTGAGATCTGTTCTGATGCAGTGAAGCGCAGTGATTTTTACTTTCGCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

85.861

100

0.859