Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   R4535_RS14975 Genome accession   NZ_CP137092
Coordinates   446541..447635 (+) Length   364 a.a.
NCBI ID   WP_057555456.1    Uniprot ID   -
Organism   Vibrio cholerae strain DL4211     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 441541..452635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS14945 (R4535_14920) - 442701..442952 (-) 252 WP_001882582.1 YgjV family protein -
  R4535_RS14950 (R4535_14925) - 443365..443685 (-) 321 WP_001089529.1 DUF496 family protein -
  R4535_RS14955 (R4535_14930) - 443873..444070 (+) 198 WP_001246073.1 hypothetical protein -
  R4535_RS14960 (R4535_14935) - 444112..444762 (+) 651 WP_033931999.1 YceH family protein -
  R4535_RS14965 (R4535_14940) - 444762..445067 (+) 306 WP_076025175.1 GIY-YIG nuclease family protein -
  R4535_RS14970 (R4535_14945) traF 445169..446329 (+) 1161 WP_076025176.1 conjugal transfer protein TraF -
  R4535_RS14975 (R4535_14950) luxP 446541..447635 (+) 1095 WP_057555456.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  R4535_RS14980 (R4535_14955) luxQ 447653..450226 (+) 2574 WP_076025177.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  R4535_RS14985 (R4535_14960) - 450218..450883 (-) 666 WP_000268201.1 flagellar brake protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41255.94 Da        Isoelectric Point: 6.5074

>NTDB_id=894979 R4535_RS14975 WP_057555456.1 446541..447635(+) (luxP) [Vibrio cholerae strain DL4211]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQVHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=894979 R4535_RS14975 WP_057555456.1 446541..447635(+) (luxP) [Vibrio cholerae strain DL4211]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGTACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCAGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACAGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCGCGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.352

100

0.984