Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAYR29_RS10385 Genome accession   NZ_CP154918
Coordinates   1919921..1921057 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1914921..1926057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS10345 (AAYR29_10345) xre 1915256..1915597 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  AAYR29_RS10350 (AAYR29_10350) xkdA 1915760..1916356 (+) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  AAYR29_RS10355 (AAYR29_10355) xpdC 1916400..1917236 (-) 837 WP_003245071.1 manganese catalase family protein -
  AAYR29_RS10360 (AAYR29_10360) pghB 1917312..1917914 (-) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  AAYR29_RS10365 (AAYR29_10365) yjqA 1918019..1918396 (+) 378 WP_345806514.1 PH domain-containing protein -
  AAYR29_RS10370 (AAYR29_10370) xlyB 1918436..1919389 (-) 954 WP_134982734.1 N-acetylmuramoyl-L-alanine amidase -
  AAYR29_RS10375 (AAYR29_10375) yjpA 1919510..1919767 (+) 258 WP_024572656.1 YciI family protein -
  AAYR29_RS10380 (AAYR29_10380) phrA 1919797..1919931 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AAYR29_RS10385 (AAYR29_10385) rapC 1919921..1921057 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  AAYR29_RS10390 (AAYR29_10390) yjoB 1921203..1922474 (-) 1272 WP_345806426.1 ATPase YjoB -
  AAYR29_RS10395 (AAYR29_10395) yjoA 1922623..1923087 (+) 465 WP_014479541.1 DinB family protein -
  AAYR29_RS10400 (AAYR29_10400) yjnA 1923313..1924077 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  AAYR29_RS10405 (AAYR29_10405) uxaA 1924118..1925611 (-) 1494 WP_345806427.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=894968 AAYR29_RS10385 WP_015252291.1 1919921..1921057(-) (rapC) [Bacillus subtilis strain FUA2231]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=894968 AAYR29_RS10385 WP_015252291.1 1919921..1921057(-) (rapC) [Bacillus subtilis strain FUA2231]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418