Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   R4535_RS05305 Genome accession   NZ_CP137091
Coordinates   1137150..1138574 (-) Length   474 a.a.
NCBI ID   WP_001959621.1    Uniprot ID   -
Organism   Vibrio cholerae strain DL4211     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132150..1143574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS05280 (R4535_05275) purT 1132659..1133834 (-) 1176 WP_069730506.1 phosphoribosylglycinamide formyltransferase 2 -
  R4535_RS05285 (R4535_05280) - 1133988..1134863 (-) 876 WP_000462870.1 AEC family transporter -
  R4535_RS05290 (R4535_05285) cdd 1135022..1135909 (-) 888 WP_001245905.1 cytidine deaminase -
  R4535_RS05295 (R4535_05290) - 1136079..1136753 (-) 675 WP_000266245.1 LrgB family protein -
  R4535_RS05300 (R4535_05295) - 1136744..1137118 (-) 375 WP_032467912.1 CidA/LrgA family protein -
  R4535_RS05305 (R4535_05300) sbcB 1137150..1138574 (-) 1425 WP_001959621.1 exodeoxyribonuclease I Machinery gene
  R4535_RS05310 (R4535_05305) - 1138718..1140091 (-) 1374 WP_000117953.1 L-cystine transporter -
  R4535_RS05315 (R4535_05310) msrB 1140437..1140883 (+) 447 WP_057554378.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R4535_RS05320 (R4535_05315) cobT 1141494..1142519 (+) 1026 WP_057554379.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  R4535_RS05325 (R4535_05320) - 1142519..1143304 (+) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54516.85 Da        Isoelectric Point: 5.9820

>NTDB_id=894957 R4535_RS05305 WP_001959621.1 1137150..1138574(-) (sbcB) [Vibrio cholerae strain DL4211]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=894957 R4535_RS05305 WP_001959621.1 1137150..1138574(-) (sbcB) [Vibrio cholerae strain DL4211]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACT
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCTGATGTGATTGC
CACTATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAACACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGGTTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987