Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R4535_RS02100 Genome accession   NZ_CP137091
Coordinates   424967..425485 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain DL4211     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 419967..430485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS02090 (R4535_02085) - 420377..423232 (+) 2856 WP_207807150.1 pitrilysin family protein -
  R4535_RS02095 (R4535_02090) gshA 423344..424918 (+) 1575 WP_002156718.1 glutamate--cysteine ligase -
  R4535_RS02100 (R4535_02095) luxS 424967..425485 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  R4535_RS02105 (R4535_02100) - 425555..426835 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  R4535_RS02110 (R4535_02105) - 426918..427712 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  R4535_RS02115 (R4535_02110) ffh 427925..429310 (+) 1386 WP_000462715.1 signal recognition particle protein -
  R4535_RS02120 (R4535_02115) rpsP 429546..429794 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  R4535_RS02125 (R4535_02120) rimM 429822..430376 (+) 555 WP_076025443.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=894949 R4535_RS02100 WP_001130227.1 424967..425485(+) (luxS) [Vibrio cholerae strain DL4211]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=894949 R4535_RS02100 WP_001130227.1 424967..425485(+) (luxS) [Vibrio cholerae strain DL4211]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTATTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCTCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1