Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   R3L04_RS06870 Genome accession   NZ_CP137075
Coordinates   1424429..1425229 (+) Length   266 a.a.
NCBI ID   WP_004738086.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1419429..1430229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS06845 (R3L04_06855) - 1420339..1421637 (+) 1299 WP_086225874.1 glycosyltransferase family 1 protein -
  R3L04_RS06850 (R3L04_06860) - 1421662..1422213 (+) 552 WP_000669568.1 phosphatase PAP2 family protein -
  R3L04_RS06855 (R3L04_06865) iscX 1422313..1422513 (+) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  R3L04_RS06860 (R3L04_06870) ndk 1422627..1423058 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  R3L04_RS06865 (R3L04_06875) rlmN 1423181..1424413 (+) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  R3L04_RS06870 (R3L04_06880) pilF 1424429..1425229 (+) 801 WP_004738086.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  R3L04_RS06875 (R3L04_06885) - 1425220..1426011 (+) 792 WP_000405163.1 RodZ domain-containing protein -
  R3L04_RS06880 (R3L04_06890) ispG 1426033..1427148 (+) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R3L04_RS06885 (R3L04_06895) hisS 1427145..1428437 (+) 1293 WP_000095261.1 histidine--tRNA ligase -
  R3L04_RS06890 (R3L04_06900) - 1428466..1429164 (+) 699 WP_000058787.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30094.44 Da        Isoelectric Point: 9.2307

>NTDB_id=894855 R3L04_RS06870 WP_004738086.1 1424429..1425229(+) (pilF) [Acinetobacter baumannii strain SNUBHAB0006]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=894855 R3L04_RS06870 WP_004738086.1 1424429..1425229(+) (pilF) [Acinetobacter baumannii strain SNUBHAB0006]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGCCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCTTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACTTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGTGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

100

100

1
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726