Detailed information NTG0894848

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R3L04_RS05995
• Genome accession: NZ_CP137075
• Coordinates: 1232425..1233285 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain SNUBHAB0006
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1227425..1238285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3L04_RS05970 (R3L04_05980)	-	1228317..1229627 (+)	1311	WP_000753286.1	tetratricopeptide repeat protein	-
R3L04_RS05975 (R3L04_05985)	-	1229704..1230030 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
R3L04_RS05980 (R3L04_05990)	rlmB	1230132..1230881 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
R3L04_RS05985 (R3L04_05995)	-	1230916..1231830 (+)	915	WP_000075015.1	DMT family transporter	-
R3L04_RS05990 (R3L04_06000)	coaE	1231827..1232423 (-)	597	WP_031957987.1	dephospho-CoA kinase	-
R3L04_RS05995 (R3L04_06005)	pilD	1232425..1233285 (-)	861	WP_001152269.1	A24 family peptidase	Machinery gene
R3L04_RS06000 (R3L04_06010)	pilC	1233285..1234511 (-)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
R3L04_RS06005 (R3L04_06015)	pilB	1234541..1236253 (-)	1713	WP_031957988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R3L04_RS06010 (R3L04_06020)	tpiA	1236544..1237338 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
R3L04_RS06015 (R3L04_06025)	secG	1237351..1237680 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=894848 R3L04_RS05995 WP_001152269.1 1232425..1233285(-) (pilD) [Acinetobacter baumannii strain SNUBHAB0006]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=894848 R3L04_RS05995 WP_001152269.1 1232425..1233285(-) (pilD) [Acinetobacter baumannii strain SNUBHAB0006]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437